Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq51 93.3 2e-13 >seq51 Length=900598 Score = 93.3 bits (102), Expect = 2e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || || ||||| || || || ||||||||||| || || || Sbjct 382804 ATGCAAATCTTCGTTAAGACTCTCACTGGAAAGACCATCACTCTTGATGTCGAGTCTTCG 382863 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | || || ||||| |||||||| |||||||| || ||||| Sbjct 382864 GACACCATCGAGAACGTGAAGGCCAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAG 382923 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | |||||| | || || || || || || || | ||| | | || || || Sbjct 382924 CAGCGTCTGATTTTCGCTGGAAAGCAGCTCGAGGACGGTCGCACTCTTTCTGACTACAAC 382983 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || |||||| Sbjct 382984 ATCCAGAAGGAGTCCACTCTTCAC 383007 Score = 93.3 bits (102), Expect = 2e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 ||| |||| || || |||||||| | |||||||| | ||||| || | ||| | || Sbjct 403996 GAACAAATCTCCTCCATGGTTCTAAGCAAAATGAAGCAGACAGCGGAGAATTATCTAGGC 403937 Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366 ||||| | ||| | || || ||||| ||||||||||| || || || ||| Sbjct 403936 GAGAAGGTTACAAACGCAATCATCACCGTTCCTGCTTATTTCAACGACAGCCAGCGTCAA 403877 Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 |||| |||||||| || | || || || | || ||||| || || || || || || Sbjct 403876 TCAACGAAAGATGCTGGCCTCATCGCAGGCCTGAACGTTCTGCGTATCATCAACGAGCCG 403817 Query 451427 ACAGCAGCTGCTCTAGCATATGGACT 451452 |||||||| || || || || ||||| Sbjct 403816 ACAGCAGCAGCCCTGGCTTACGGACT 403791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975717033049832