Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq51 206 2e-47 >seq51 Length=900598 Score = 206 bits (228), Expect = 2e-47 Identities = 465/694 (67%), Gaps = 6/694 (1%) Strand=Plus/Plus Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 || ||||| ||||| ||||||||||| | ||||| ||| | || || | || | |||| Sbjct 102327 CGGTTATCGAAATCCTCACCTCCCAAGTGAGTATCTCCAGCAGTCGCCTTCACCTCGAAA 102386 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | ||| || || | |||| || | ||||| ||| |||||||||| ||| ||||| Sbjct 102387 ATTCCGTCCTCGATCGACAGCAGCGACACATCGAAGGTACCACCACCCAGATCGAAAATC 102446 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 || | ||| ||| | | || || | || ||||| || |||| |||||| ||||| Sbjct 102447 AGAATGTTC--TTC-TCGCCTCCCTTCTGGTCCAGACCGTAAGCAATAGCAGCGGCAGTG 102503 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || || ||||| | || || || || |||||||| |||| ||||| || || || Sbjct 102504 GGCTCGTTGATAATACGCATCACGTTCAGTCCAGCAATCGTTCCAGCATCCTTCGTAGCC 102563 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 || | || |||||||| || |||||||| |||||||| || || | | || || || Sbjct 102564 TGACGCTGCGAATCGTTGAAGTATGCAGGCACAGTAATCACAGCGTTCTTCACCTCCTTG 102623 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 || | ||||| || | || ||||| || | | | ||| || ||||| | || Sbjct 102624 CCCAAATAAGACTCAGCAATCTGCTTCATCTTCGTCAGCACCATCGAAGAAATCTCCTCA 102683 Query 518381 GGGGAATATTGCTTGGATTCATTTTGATATGATACTTC-AAAATATGGTT--TATTACCA 518437 || || | ||||| || | || || || | | | | || | | | Sbjct 102684 GGAGAGAACTGCTTTCTCTCGCCCTTGTACTCCACCTCGATCACAGGCTTGCCCTCAGGA 102743 Query 518438 ACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAA 518497 | | | | | || ||||||| |||||||| |||||| ||| | || Sbjct 102744 CCTCTCTTCAGAGTGAAAGGCCAGTGCTTCATATCGCTCTGAACAGAGGCGTCGTCGAAC 102803 Query 518498 TCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGA 518557 | | |||||| | || || || || || | ||| ||||| || || || || | || Sbjct 102804 TTACGACCAATCAGACGCTTCGCGTCGAACACAGTGTTGGTAGGGTTCATAGCCACCTGG 102863 Query 518558 TATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTT 518617 | || || ||||| ||||||||| | ||||| || || || | ||||| || ||||| Sbjct 102864 TTCTTAGCAGCATCACCAATCAGACGCTCTGTATCAGTGAAAGCCACATAGGAAGGAGTG 102923 Query 518618 GTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACA 518677 || | | ||| || || || |||||||| || || || | |||||||| ||||| ||| Sbjct 102924 GTTCTCTGACCCTGGTCGTTGGCAATAATCTCCACCTTGTCGTTTTGCCAAACACCCACA 102983 Query 518678 CAACTAAAAGTTGTTCCTAAATCAATACCAATAg 518711 ||| | | ||||| || ||||||||||||| || Sbjct 102984 CAAGAATAGGTTGTACCCAAATCAATACCAACAG 103017 Score = 203 bits (224), Expect = 2e-46 Identities = 464/694 (67%), Gaps = 6/694 (1%) Strand=Plus/Plus Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 || ||||| ||||| ||||||||||| | ||||| ||| | || || | || | |||| Sbjct 682707 CGGTTATCGAAATCCTCACCTCCCAAGTGAGTATCTCCAGCAGTCGCCTTCACCTCGAAA 682766 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | ||| || || | |||| || | ||||| ||| |||||||||| ||| ||||| Sbjct 682767 ATTCCGTCCTCGATCGACAGCAGCGACACATCGAAGGTACCACCACCCAGATCGAAAATC 682826 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 || | ||| ||| | || || | || ||||| || |||| |||||| ||||| Sbjct 682827 AGAATGTTC--TTC-TCACCTCCCTTCTGGTCCAGACCGTAAGCAATAGCAGCGGCAGTG 682883 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || || ||||| | || || || || |||||||| |||| ||||| || || || Sbjct 682884 GGCTCGTTGATAATACGCATCACGTTCAGTCCAGCAATCGTTCCAGCATCCTTCGTAGCC 682943 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 || | || |||||||| || || ||||| |||||||| || |||| | || || || Sbjct 682944 TGACGCTGCGAATCGTTGAAGTAGGCAGGCACAGTAATCACAGCATTCTTCACCTCCTTG 683003 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 || | ||||| || | || ||||| || | | | ||| || ||||| | || Sbjct 683004 CCCAAATAAGACTCAGCAATCTGCTTCATCTTCGTCAGCACCATCGAAGAAATCTCCTCA 683063 Query 518381 GGGGAATATTGCTTGGATTCATTTTGATATGATACTTC-AAAATATGGTT--TATTACCA 518437 || || | ||||| || | || || || | | | | || | | | Sbjct 683064 GGAGAGAACTGCTTTCTCTCGCCCTTGTACTCCACCTCGATCACAGGCTTGCCCTCAGGA 683123 Query 518438 ACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAA 518497 | | | | | || ||||||| |||||||| |||||| ||| | || Sbjct 683124 CCTCTCTTCAGAGTGAAAGGCCAGTGCTTCATATCGCTCTGAACAGAGGCGTCGTCGAAC 683183 Query 518498 TCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGA 518557 | | |||||| | || || || || || | ||| ||||| || || || || | || Sbjct 683184 TTACGACCAATCAGACGCTTCGCGTCGAACACAGTGTTGGTAGGGTTCATAGCCACCTGG 683243 Query 518558 TATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTT 518617 | || || ||||| ||||||||| | ||||| || || || | ||||| || ||||| Sbjct 683244 TTCTTAGCAGCATCACCAATCAGACGCTCTGTATCAGTGAAAGCCACATAGGAAGGAGTG 683303 Query 518618 GTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACA 518677 || | | ||| || || || |||||||| || || || | |||||||| ||||| ||| Sbjct 683304 GTTCTCTGACCCTGGTCGTTGGCAATAATCTCCACCTTGTCGTTTTGCCAAACACCCACA 683363 Query 518678 CAACTAAAAGTTGTTCCTAAATCAATACCAATAg 518711 ||| | | ||||| || ||||||||||||| || Sbjct 683364 CAAGAATAGGTTGTACCCAAATCAATACCAACAG 683397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780819720342124