Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2 176 1e-38 seq51 156 9e-33 seq52 147 5e-30 >seq2 Length=1866585 Score = 176 bits (194), Expect = 1e-38 Identities = 168/214 (79%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || || || || ||||| ||||| || | |||||| | ||||| ||| Sbjct 484745 ACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGTCCATCCTCG 484804 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | || || || ||||| ||||| || || ||||| ||| Sbjct 484805 AGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGA 484864 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| ||||| || ||| ||||| |||||||| | ||||||| Sbjct 484865 ATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGACTCCACATCAAGGGTGATCGTCTTT 484924 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT-TTAT 195144 || |||||||| |||||||| | |||||| |||| Sbjct 484925 CCAGTCAAAGTCTTTACGAAAATTTGCATATTAT 484958 >seq51 Length=900598 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||||||||| || || || ||||| || | |||||| | || || ||| Sbjct 383012 ACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCGTCCTCG 382953 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || || || ||||| ||||| || || || || ||| Sbjct 382952 AGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGA 382893 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| |||||||||||| || || ||||| || | |||||| Sbjct 382892 ATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCGACATCAAGAGTGATGGTCTTT 382833 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || ||||| | |||||| Sbjct 382832 CCAGTGAGAGTCTTAACGAAGATTTGCAT 382804 >seq52 Length=870417 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||||||||| || ||||| ||||| || | |||||| | ||||| ||| Sbjct 711972 ACCAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCG 711913 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || || || ||||| ||||| || || || || ||| Sbjct 711912 AGCTGCTTTCCAGCGAAAATCAGGCGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGA 711853 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || ||||| || ||||| ||| || || || || || | ||||| Sbjct 711852 ATCTTAGCCTTCACATTCTCGATAGTGTCAGAAGACTCAACATCGAGAGTGATGGTCTTC 711793 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| ||||| | |||||| Sbjct 711792 CCTGTGAGTGTTTTCACGAAGATTTGCAT 711764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480832377418