Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq52 107 1e-18 seq2 104 2e-17 seq51 95.1 8e-15 >seq52 Length=870417 Score = 107 bits (118), Expect = 1e-18 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||| || ||||||||||| ||||| ||||| | || |||| || Sbjct 711972 ACCAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCG 711913 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || || || ||||| ||| | || | |||||||| || | Sbjct 711912 AGCTGCTTTCCAGCGAAAATCAGGCGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGA 711853 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | ||| | ||||||||||| || ||||| | Sbjct 711852 ATCTTAGCCTTCAC--ATTCTCGATAGTGTCAGAAGACTCAACATCGAGAGTGATGGTCT 711795 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGT 34987 | || ||||| || ||||| ||||| ||||| |||| Sbjct 711794 TCCCTGTGAGTGTTTTCACGAAGATTTGCATCGTCGT 711758 >seq2 Length=1866585 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| ||||| | ||| |||| || ||||| ||||| ||||| Sbjct 484762 TTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGTCCATCCTCGAGCTGCTTTCCAGCAAA 484821 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || ||||| ||| | || | ||||||||||| |||||| || ||| Sbjct 484822 GATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTT 484881 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| | ||| ||||| | ||| || || ||||| || | |||||| || Sbjct 484882 CTCGATGGTATCAGAAGACTCCACATCAAGGGTGATCGTCTTTCCAGTCAAAGTCTTTAC 484941 Query 34970 AAAGATCTGCATATT 34984 || || |||||||| Sbjct 484942 GAAAATTTGCATATT 484956 >seq51 Length=900598 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||| || ||||| ||||| ||||| ||||| | || | || || Sbjct 383012 ACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCGTCCTCG 382953 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || || || ||||| ||| | || | |||||||| || | Sbjct 382952 AGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGA 382893 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 ||||| || ||| | ||||| | ||| | ||| ||||| | || ||||| Sbjct 382892 ATCTTGGCCTTCACGT----TCTCGATGGTGTCCGAAGACTCGACATCAAGAGTGATGGT 382837 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| ||||||||||| || ||||| ||||| Sbjct 382836 CTTTCCAGTGAGAGTCTTAACGAAGATTTGCAT 382804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633386350512