Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq51 196 4e-44 seq2 129 5e-24 >seq51 Length=900598 Score = 196 bits (216), Expect = 4e-44 Identities = 378/549 (69%), Gaps = 23/549 (4%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||||| || || || ||| |||||| |||||||||||||| | || || || Sbjct 103012 GGTATTGATTTGGGTACAACCTATTCTTGTGTGGGTGTTTGGCAAAACGACAAGGTGGAG 102953 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 ||||||||||| || || ||| | ||||| ||||| || ||||| ||||||| || || Sbjct 102952 ATTATTGCCAACGACCAGGGTCAGAGAACCACTCCTTCCTATGTGGCTTTCACTGATACA 102893 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 || | | | |||||||||| || || | || | || || |||||||| ||| | Sbjct 102892 GAGCGTCTGATTGGTGATGCTGCTAAGAACCAGGTGGCTATGAACCCTACCAACACTGTG 102833 Query 550178 TTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATG 550237 || || || || ||| | ||||| | | || | || | |||||||| |||||| Sbjct 102832 TTCGACGCGAAGCGTCTGATTGGTCGTAAGTTCGACGACGCCTCTGTTCAGAGCGATATG 102773 Query 550238 AAGCATTGGCCTTTCCAAATTGTTAA---TGTTTCT---GGAAAACCTTATATTGAAG-- 550289 ||||| ||||||||| | | | || | | || || || ||| || || | Sbjct 102772 AAGCACTGGCCTTTC---ACTCTGAAGAGAGGTCCTGAGGGCAAGCCTGTGATCGAGGTG 102716 Query 550290 --CTACTCATGAAGGATCTGTTAAA-CAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 ||| |||| | ||| || || || || || | ||||| || ||||| Sbjct 102715 GAGTAC-----AAGGGCGAGAGAAAGCAGTTCTCTCCTGAGGAGATTTCTTCGATGGTGC 102661 Query 550347 TAATGAAAATGAAACAAACAGC-CAGTGCTTTTGTTGGTCAA-GAAGTTACGGATGCAGT 550404 | | ||| ||||| || | || ||| ||| | |||| ||| || || | | | || || Sbjct 102660 TGACGAAGATGAAGCAGATTGCTGAGT-CTTAT-TTGGGCAAGGAGGTGAAGAACGCTGT 102603 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464 || ||||| || ||||| || || || || || ||||| ||||| || ||||||||| Sbjct 102602 GATTACTGTGCCTGCATACTTCAACGATTCGCAGCGTCAGGCTACGAAGGATGCTGGAAC 102543 Query 550465 TATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524 ||||||||||| || || | ||||||||||| || || ||||| ||||| |||| || Sbjct 102542 GATTGCTGGACTGAACGTGATGCGTATTATCAACGAGCCCACTGCCGCTGCTATTGCTTA 102483 Query 550525 TGGACTTGA 550533 || || || Sbjct 102482 CGGTCTGGA 102474 Score = 196 bits (216), Expect = 4e-44 Identities = 378/549 (69%), Gaps = 23/549 (4%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||||| || || || ||| |||||| |||||||||||||| | || || || Sbjct 683392 GGTATTGATTTGGGTACAACCTATTCTTGTGTGGGTGTTTGGCAAAACGACAAGGTGGAG 683333 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 ||||||||||| || || ||| | ||||| ||||| || ||||| ||||||| || || Sbjct 683332 ATTATTGCCAACGACCAGGGTCAGAGAACCACTCCTTCCTATGTGGCTTTCACTGATACA 683273 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 || | | | |||||||||| || || | || | || || |||||||| ||| | Sbjct 683272 GAGCGTCTGATTGGTGATGCTGCTAAGAACCAGGTGGCTATGAACCCTACCAACACTGTG 683213 Query 550178 TTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATG 550237 || || || || ||| | ||||| | | || | || | |||||||| |||||| Sbjct 683212 TTCGACGCGAAGCGTCTGATTGGTCGTAAGTTCGACGACGCCTCTGTTCAGAGCGATATG 683153 Query 550238 AAGCATTGGCCTTTCCAAATTGTTAA---TGTTTCT---GGAAAACCTTATATTGAAG-- 550289 ||||| ||||||||| | | | || | | || || || ||| || || | Sbjct 683152 AAGCACTGGCCTTTC---ACTCTGAAGAGAGGTCCTGAGGGCAAGCCTGTGATCGAGGTG 683096 Query 550290 --CTACTCATGAAGGATCTGTTAAA-CAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 ||| |||| | ||| || || || || || | ||||| || ||||| Sbjct 683095 GAGTAC-----AAGGGCGAGAGAAAGCAGTTCTCTCCTGAGGAGATTTCTTCGATGGTGC 683041 Query 550347 TAATGAAAATGAAACAAACAGC-CAGTGCTTTTGTTGGTCAA-GAAGTTACGGATGCAGT 550404 | | ||| ||||| || | || ||| ||| | |||| ||| || || | | |||| || Sbjct 683040 TGACGAAGATGAAGCAGATTGCTGAGT-CTTAT-TTGGGCAAGGAGGTGAAGAATGCTGT 682983 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464 || ||||| || || || || || || || || ||||| ||||| || ||||||||| Sbjct 682982 GATTACTGTGCCTGCCTACTTCAACGATTCGCAGCGTCAGGCTACGAAGGATGCTGGAAC 682923 Query 550465 TATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524 ||||||||||| || || | ||||||||||| || || ||||| ||||| |||| || Sbjct 682922 GATTGCTGGACTGAACGTGATGCGTATTATCAACGAGCCCACTGCCGCTGCTATTGCTTA 682863 Query 550525 TGGACTTGA 550533 || || || Sbjct 682862 CGGTCTGGA 682854 Score = 104 bits (114), Expect = 2e-16 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 550324 AGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGG 550383 ||||||||| || || |||||| ||| |||||||| || ||||| || | | || Sbjct 403997 AGAACAAATCTCCTCCATGGTTCTAAGCAAAATGAAGCAGACAGCGGAGAATTATCTAGG 403938 Query 550384 TCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTC 550442 | ||||| |||| | ||| | || || || || || ||||| || ||| || |||| Sbjct 403937 -CGAGAAGGTTACAAACGCAATCATCACCGTTCCTGCTTATTTCAACGACAGCCAGCGTC 403879 Query 550443 AAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAAC 550502 || | || ||||||||||| | || || || || || ||||| ||||| ||||| || | Sbjct 403878 AATCAACGAAAGATGCTGGCCTCATCGCAGGCCTGAACGTTCTGCGTATCATCAACGAGC 403819 Query 550503 CTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 | || || || || || || || ||||| || || Sbjct 403818 CGACAGCAGCAGCCCTGGCTTACGGACTGGACAA 403785 >seq2 Length=1866585 Score = 129 bits (142), Expect = 5e-24 Identities = 362/548 (66%), Gaps = 12/548 (2%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || ||||| ||| | || ||||| || ||| || ||||| | ||| || |||| Sbjct 966959 ATCGGTATCGATCTGGGTACCACCTACTCTTGCGTGGGTGTGTACAGAAAGGGACAAGTG 966900 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| ||| ||||||| || |||||| | | |||||| || || || ||| || Sbjct 966899 GAAATCATTCCCAATGAGCAGGGTAACCGTATTACTCCTTCCTACGTCGCTTGGGACGAC 966840 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 | |||| | | |||||||||| || || | || ||||| |||||| |||| Sbjct 966839 AAGGAACGTATGATTGGTGATGCTGCCAAGAACCAGGCCACCATCAATCCTGAGCGTACT 966780 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 ||||| |||| || ||| | ||||| | | | |||||| ||||||||||| ||| Sbjct 966779 ATTTTCGATGTGAAGCGTCTGATTGGTCGTAAGTACAATGATCCGACTGTTCAGCACGAT 966720 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACC--TTAT--AT-TGAAG 550289 | |||| ||||||||||| | | | ||||| || | || || || || Sbjct 966719 AAGAAGATGTGGCCTTTCCATGTGATGGACAAGAAGGGAAAGCCCGTGATTCATGTGGAG 966660 Query 550290 CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 || | | ||| | || | || || || || |||| || ||||||| | | Sbjct 966659 --ACCAACAACGGACC---GAAGGACTTCTCTCCTGAGGAAATCTCCGCTATGGTGCTGA 966605 Query 550350 TGAAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATA 550408 || ||||| || | ||| ||| ||| | | ||| | || || | | | || || || Sbjct 966604 CCAAGATGAAGCAGATTGCCGAGT-CTTATTTGGGTGAGGAGGTGAAGAACGCTGTGATC 966546 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || || || | || ||||| ||||| || ||||||||| ||| Sbjct 966545 ACTGTGCCTGCCTACTTCAACGATGCGCAGCGTCAGGCTACGAAGGATGCTGGAACGATT 966486 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || || | || | ||||| || || || || ||||| ||||| |||| || || Sbjct 966485 GCGGGTCTGAGCGTGCAGCGTATCATTAACGAGCCCACTGCCGCTGCTATTGCCTACGGT 966426 Query 550529 CTTGATAA 550536 || || || Sbjct 966425 CTGGACAA 966418 Score = 105 bits (116), Expect = 5e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| |||||||| |||||||| ||| || ||| ||||| |||| ||||| | | Sbjct 484736 AGACGAAGTACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGT 484795 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || || || ||||| ||||| || | | |||||||| || |||||||| || Sbjct 484796 CCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCC 484855 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAGAGT 563435 || || ||||| || || || ||| || ||||||| || | || || || || Sbjct 484856 TTGTCCTGAATCTTGGCCTTCACGTTCTCGATGGTATCAGAA-GACTCCACATCAAGGGT 484914 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || || ||||| | ||| || ||||||||||||||| Sbjct 484915 GATCGTCTTTCCAGTCAAAGTCTTTACGAAAATTTGCATA 484954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029293144236460