Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq51 201 7e-46 seq2 109 4e-18 seq52 91.5 1e-12 >seq51 Length=900598 Score = 201 bits (222), Expect = 7e-46 Identities = 381/551 (69%), Gaps = 11/551 (2%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || || |||||| | |||||||||||| | || || | Sbjct 103014 TTGGTATTGATTTGGGTACAACCTATTCTTGTGTGGGTGTTTGGCAAAACGACAAGGTGG 102955 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || |||||||| ||||| ||| | ||||| || || || ||||| |||| ||||| | Sbjct 102954 AGATTATTGCCAACGACCAGGGTCAGAGAACCACTCCTTCCTATGTGGCTTTCACTGATA 102895 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | ||| ||||| ||||||||||| | || | || || ||| || ||| Sbjct 102894 CAGAGCGTCTGATTGGTGATGCTGCTAAGAACCAGGTGGCTATGAACCCTACCAACACTG 102835 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || || || || | ||||||||||||| || || || || |||| || |||| Sbjct 102834 TGTTCGACGCGAAGCGTCTGATTGGTCGTAAGTTCGACGACGCCTCTGTTCAGAGCGATA 102775 Query 474573 TGCGTCATTGGCCTTTTAAGGTG-ATAAATGT--TGGTGGTAAACC--ATATATAGAAGC 474627 || || |||||||| | || | | | || || || || || || || | Sbjct 102774 TGAAGCACTGGCCTTTCACTCTGAAGAGAGGTCCTGAGGGCAAGCCTGTGATCGAGGTGG 102715 Query 474628 AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGC 474687 | |||| | || || | || || || || || || | |||||||| ||||| | | Sbjct 102714 AGTACAAG--GGCGAGAGAAAGCAGTTCTCTCCTGAGGAGATTTCTTCGATGGTGCTGAC 102657 Query 474688 CAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAA-GAAGTAACTGATGCAGTAATT 474745 || ||||| || | || ||| || ||| |||| ||| || || | | || || ||| Sbjct 102656 GAAGATGAAGCAGATTGCTGAG-TCTTAT-TTGGGCAAGGAGGTGAAGAACGCTGTGATT 102599 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||| || ||||| || || ||||| || ||||| || || || ||||| |||| ||| Sbjct 102598 ACTGTGCCTGCATACTTCAACGATTCGCAGCGTCAGGCTACGAAGGATGCTGGAACGATT 102539 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || || || || || | |||||||| || || || || || || || ||||||| ||| Sbjct 102538 GCTGGACTGAACGTGATGCGTATTATCAACGAGCCCACTGCCGCTGCTATTGCTTACGGT 102479 Query 474866 CTTGATAAGAA 474876 || || |||| Sbjct 102478 CTGGACCAGAA 102468 Score = 201 bits (222), Expect = 7e-46 Identities = 381/551 (69%), Gaps = 11/551 (2%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || || |||||| | |||||||||||| | || || | Sbjct 683394 TTGGTATTGATTTGGGTACAACCTATTCTTGTGTGGGTGTTTGGCAAAACGACAAGGTGG 683335 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || |||||||| ||||| ||| | ||||| || || || ||||| |||| ||||| | Sbjct 683334 AGATTATTGCCAACGACCAGGGTCAGAGAACCACTCCTTCCTATGTGGCTTTCACTGATA 683275 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | ||| ||||| ||||||||||| | || | || || ||| || ||| Sbjct 683274 CAGAGCGTCTGATTGGTGATGCTGCTAAGAACCAGGTGGCTATGAACCCTACCAACACTG 683215 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || || || || | ||||||||||||| || || || || |||| || |||| Sbjct 683214 TGTTCGACGCGAAGCGTCTGATTGGTCGTAAGTTCGACGACGCCTCTGTTCAGAGCGATA 683155 Query 474573 TGCGTCATTGGCCTTTTAAGGTG-ATAAATGT--TGGTGGTAAACC--ATATATAGAAGC 474627 || || |||||||| | || | | | || || || || || || || | Sbjct 683154 TGAAGCACTGGCCTTTCACTCTGAAGAGAGGTCCTGAGGGCAAGCCTGTGATCGAGGTGG 683095 Query 474628 AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGC 474687 | |||| | || || | || || || || || || | |||||||| ||||| | | Sbjct 683094 AGTACAAG--GGCGAGAGAAAGCAGTTCTCTCCTGAGGAGATTTCTTCGATGGTGCTGAC 683037 Query 474688 CAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAA-GAAGTAACTGATGCAGTAATT 474745 || ||||| || | || ||| || ||| |||| ||| || || | |||| || ||| Sbjct 683036 GAAGATGAAGCAGATTGCTGAG-TCTTAT-TTGGGCAAGGAGGTGAAGAATGCTGTGATT 682979 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||| || || || || || ||||| || ||||| || || || ||||| |||| ||| Sbjct 682978 ACTGTGCCTGCCTACTTCAACGATTCGCAGCGTCAGGCTACGAAGGATGCTGGAACGATT 682919 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || || || || || | |||||||| || || || || || || || ||||||| ||| Sbjct 682918 GCTGGACTGAACGTGATGCGTATTATCAACGAGCCCACTGCCGCTGCTATTGCTTACGGT 682859 Query 474866 CTTGATAAGAA 474876 || || |||| Sbjct 682858 CTGGACCAGAA 682848 >seq2 Length=1866585 Score = 109 bits (120), Expect = 4e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| |||||||| ||||| || ||| || || || || |||| ||||| Sbjct 484733 CGCAGACGAAGTACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTA 484792 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||| || || |||||||||||||| || | ||| || ||||| || |||||||| Sbjct 484793 CGTCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCC 484852 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 |||||||| |||||||| || || || || ||||||| | | | ||||| Sbjct 484853 TCCTTGTCCTGAATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGACTCCA-CATCAAG 484911 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || || | |||||| ||||||||||| Sbjct 484912 GGTGATCGTCTTTCCAGTCAAAGTCTTTACGAAAATTTG 484950 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || | || || || || || || || || |||| || || Sbjct 1646191 ACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAGAGGGT 1646132 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| ||||| ||||||||||| ||||| ||||| || ||||| || |||||||| Sbjct 1646131 GCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGAATTCC 1646072 Query 480671 TTCCTTGTCTTGAATCTT 480688 |||||||| |||||||| Sbjct 1646071 CTCCTTGTCCTGAATCTT 1646054 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || | || || || || || || || || |||| || || Sbjct 1768651 ACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAGAGGGT 1768710 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| ||||| ||||||||||| ||||| ||||| || ||||| || |||||||| Sbjct 1768711 GCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGAATTCC 1768770 Query 480671 TTCCTTGTCTTGAATCTT 480688 |||||||| |||||||| Sbjct 1768771 CTCCTTGTCCTGAATCTT 1768788 >seq52 Length=870417 Score = 91.5 bits (100), Expect = 1e-12 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || || || ||||| || || || || || || |||| ||||| Sbjct 711984 CGCAGACGAAGCACCAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTG 711925 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| || || ||||||||||| ||||| || || || ||||| || |||||||| Sbjct 711924 CGGCCATCCTCGAGCTGCTTTCCAGCGAAAATCAGGCGCTGCTGATCTGGGGGAATTCCC 711865 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 ||||| || |||||||| || ||| || ||||| |||| | | || || || Sbjct 711864 TCCTTATCCTGAATCTTAGCCTTCACATTCTCGATAGTGTCAGAAGACTCAA-CATCGAG 711806 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || || ||||| ||||| Sbjct 711805 AGTGATGGTCTTCCCTGTGAGTGTTTTCACGAAGATTTG 711767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268176883677992