Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq2 143 4e-29 >seq2 Length=1866585 Score = 143 bits (158), Expect = 4e-29 Identities = 355/524 (68%), Gaps = 31/524 (6%) Strand=Plus/Minus Query 47806 TCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGT 47865 ||||||| || | || || || || | |||||| | | || || || | ||||| Sbjct 557058 TCATCAGATT-TCCTACCTGCAGAATCAGCCACATTCCATAAACGTAGTCGCGAGCATGA 557000 Query 47866 CCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGA- 47924 ||||||||||||| || | || ||||| ||||| | || || ||| || ||| Sbjct 556999 CCCCAGTCACGAATGGCGTTGAGGTTTCCGAGATAGAGGCAATCCTGCACGCC--CAGCT 556942 Query 47925 -GATTGCTTTTAAT-GCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGA 47982 ||| || || || | || ||||| ||||| |||||||| ||| || | || Sbjct 556941 TGAT-GCGGACAACAGCGCGCGTGATCTTGCGAGTGACAAAAGTGGGACCTCGACGCGGC 556883 Query 47983 GATTCATGATTAAAAAGAATACCACT--ACAGGCATACATTCCGTATGATTCACGATAGT 48040 || || ||||| || |||||||| | ||| | | ||||||||| | ||||||||||| Sbjct 556882 GACTCGTGATTGAAGAGAATACCGTTGGACAAGAA--CATTCCGTAGGCTTCACGATAGT 556825 Query 48041 TCTTTACTATCCAGTACCCATAGAGTT---TTGCAACACCATAAGGAGAACGTGGATAGA 48097 | || ||||| || | ||| || | ||||||| ||||| ||||| ||||||| Sbjct 556824 TTACAACGATCCAATA---AGAGAATTGCTTGGCAACACTGTAAGGGGAACGAGGATAGA 556768 Query 48098 AAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATG 48157 |||| || |||| |||| ||| | | |||||||| || || | || ||| || | Sbjct 556767 AAGGGGTCTTCTCGTTCTGAGGAATAGCCTGCACCTTGCCGTACAACTCGGAGGTAGAAG 556708 Query 48158 CTTGATAGATACGAACCCTATCTTCCATCTCAAG----CAA--ACGGACTGCCTCAAGCA 48211 | || |||| |||| |||| | |||| || ||| ||||| || | |||| Sbjct 556707 CCTGGTAGAGACGA-----GTCTT-CTTCTCGAGTCCACAAGTACGGATAGCATTGAGCA 556654 Query 48212 CTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCT 48271 | ||||| || ||| |||| || | || | ||||||| | || || || |||| Sbjct 556653 GACGGAGGGTACCGATGCCATCCACCTCAGCACTGTACTCGGAAAGATCGAAAGACACCT 556594 Query 48272 TTACATGACTCTGTGC-CCCAAGATTATAAATCTCATCTGGTTG 48314 | || || ||||| || |||||| || || |||||||| || || Sbjct 556593 TGACGTGGCTCTGAGCTCCCAAG-TTGTAGATCTCATCAGGCTG 556551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665493950791280