Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq52 100 5e-16 >seq52 Length=870417 Score = 100 bits (110), Expect = 5e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| ||||| || | || | ||| || ||| || ||||| || | || | | Sbjct 711978 CGAAGCACCAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCA 711919 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || ||||| || ||||| | | ||| ||||| || || ||||| || ||| Sbjct 711918 TCCTCGAGCTGCTTTCCAGCGAAAATCAGGCGCTGCTGATCTGGGGGAATTCCCTCCTTA 711859 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | ||| ||||| || ||||||||||| || ||||| || Sbjct 711858 TCCTGAATCTTAGCCTTCACATTCTCGATAGTGTCAGAAGACTCAACATCGAGAGTGATG 711799 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || ||||| || || |||||||| Sbjct 711798 GTCTTCCCTGTGAGTGTTTTCACGAAGATTTGCAT 711764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899653792733280