Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq24 89.7 2e-12 seq35 84.2 6e-11 >seq24 Length=1354787 Score = 89.7 bits (98), Expect = 2e-12 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 409108 TCCATAGCTCAGTTGGTCAGAGCGTGCGGCTGTTAACCGCGAGGTCACCGGTTCGAAACC 409167 ||||||||||||||||| |||||||||||||||||||||| ||||| |||||| | || Sbjct 360678 TCCATAGCTCAGTTGGTTAGAGCGTGCGGCTGTTAACCGCAAGGTCGACGGTTCAAGCCC 360737 Query 409168 GGTTGGAGGCGtttttttC 409186 | ||| | ||||||||| Sbjct 360738 GTCTGGGAGAGTTTTTTTC 360756 >seq35 Length=1031885 Score = 84.2 bits (92), Expect = 6e-11 Identities = 178/262 (68%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| | ||| ||||| |||||| || || |||||||| || || || | || || || Sbjct 603512 CATCAAGTCCTCCATCGACTTGATCAAGCGGCGCTGAATGTATCCCGTCTTCGACGTCTT 603571 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || ||||| || | || | || || ||||| || ||||| | | ||||| || Sbjct 603572 CACCGCCGTATCGATGATTCCTTCGCGGCCTCCCATCGCGTGGAAATAGAACTCTTGTGG 603631 Query 302685 TCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG---CGAATCGT 302740 ||| || ||| | ||||| || | ||||| || |||| || | | |||||| Sbjct 603632 -CGTCAGTCCCTTCAGGTAGGAGTTCACGACGAAGCCGTGCGCGTCCGCTCCCAAATCGT 603690 Query 302741 CGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCAT 302800 | |||| || || ||||| || | | | | ||||| | ||| ||||| |||| Sbjct 603691 C---CTTGCAGAAATGCGGCAGCGTTCGATACATGAATCCGTACGCGATTCGCTTGCCAT 603747 Query 302801 CAACGTTCTGCTGTCCCAGGCA 302822 | ||||||||||| |||| ||| Sbjct 603748 CCACGTTCTGCTGCCCCACGCA 603769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816581686198