Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 1e-14 seq35 86.0 8e-11 >seq13 Length=1458350 Score = 98.7 bits (108), Expect = 1e-14 Identities = 259/376 (69%), Gaps = 27/376 (7%) Strand=Plus/Minus Query 732342 ACGCACGTCGAGGTGCACCCGCTGC-TCATGCTCGGGGCCTGCGCGTCCATCATCCCGTT 732400 |||||| |||| | || || || | | || || || | ||||| || ||||| ||||| Sbjct 1089434 ACGCACTGCGAGATCCATCC-CTCCATGATTCTGGGCGTGTGCGCCTCGATCATTCCGTT 1089376 Query 732401 CTCCAACCACAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAA 732460 | || ||||||||||| |||| || |||| ||||||| | || |||||||||||| || Sbjct 1089375 CCCCGACCACAACCAGTCGCCTCGAAACACCTACCAGTCCGCTATGGGCAAGCAGGCCAT 1089316 Query 732461 GGCCGTCGT--GTCGCTCAAC-GCCGACCACGCCATCGACACGGTGTCGCACGCCCTGTG 732517 || ||| || ||| |||| ||||| || ||| ||||| |||||| || | Sbjct 1089315 GGGCGT-GTACGTC-AGCAACTACCGACAGCG-CATGGACACCACCGCGCACGTGCTCTC 1089259 Query 732518 CTACCCGCAGGTGCCGCTGGTGCAGACCGCCATGG--AGGACGTCATCGGCGC--CA--- 732570 |||||| ||| ||| || || |||| ||| | | ||| | | | |||| || Sbjct 1089258 CTACCCCCAGCAGCCTCTCGT---GACCACCAAAGCCATGACCT-ACCTGCGCTTCAAAG 1089203 Query 732571 CGC-GCCTCCCGATGGGCCAGAATGCGCGCGTGGCCATCATGAGCGACCC---CTACAAC 732626 || |||| ||| | || | |||| | ||||| ||| || || | ||||||| Sbjct 1089202 AGCTGCCTGCCG--GCTGCA-ACTGCGTG-GTGGCGATCTGCTGCTACTCGGGCTACAAC 1089147 Query 732627 CAGGAGGACTCGCTCGTGCTCAAGCAGGACTTTGTCGACCGCGGCGGCTTCCGCTCGATG 732686 |||||||||||||| | || || ||| | |||| ||||| |||||| ||||| Sbjct 1089146 CAGGAGGACTCGCTGATCCTGAACCAGTCCGCCATCGAGCGCGGTCTCTTCCGGTCGATC 1089087 Query 732687 ATCAAGCGCACCTACC 732702 || | ||||| |||| Sbjct 1089086 TTCTACCGCACGTACC 1089071 >seq35 Length=1031885 Score = 86.0 bits (94), Expect = 8e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 507105 AGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 507164 |||| ||||||||||| ||| | | ||||| || ||||||||||| || || | Sbjct 605194 AGCGCATCAAGGGCAAGACGGGCCGCGTGCGCGGGAACCTGATGGGCAAGCGAGTGAATT 605135 Query 507165 TTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGTGC 507224 | | || ||| | || |||| | | ||||| ||||||||| |||||||||||||||| Sbjct 605134 TCAGCGGGCGGTCGGTGATCACCGCGGACCCGACGATCGACATCGACGAGGTGGGCGTGC 605075 Query 507225 CCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGACGC 507269 | | | | | || || || || |||||||||||||||| Sbjct 605074 CGAAGTCGCTGGCGGCGATCCTGACGTTCCCCGAGCGCGTGACGC 605030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107134768507118