Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 2e-14 seq5 87.8 3e-11 >seq13 Length=1458350 Score = 98.7 bits (108), Expect = 2e-14 Identities = 259/376 (69%), Gaps = 27/376 (7%) Strand=Plus/Minus Query 652886 ACGCACGTCGAGGTGCACCCGCTGC-TCATGCTGGGCGCCTGCGCTTCCATCATCCCCTT 652944 |||||| |||| | || || || | | || ||||||| ||||| || ||||| || || Sbjct 1089434 ACGCACTGCGAGATCCATCC-CTCCATGATTCTGGGCGTGTGCGCCTCGATCATTCCGTT 1089376 Query 652945 TTCCAACCACAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAA 653004 || ||||||||||| |||| || |||| ||||||| | || |||||||||||| || Sbjct 1089375 CCCCGACCACAACCAGTCGCCTCGAAACACCTACCAGTCCGCTATGGGCAAGCAGGCCAT 1089316 Query 653005 GGCCGTCGT--GTCGCTCAAC-GCCGATCACGCCATCGACACCGTGTCGCACGCCCTCTG 653061 || ||| || ||| |||| |||| || ||| |||||| |||||| |||| Sbjct 1089315 GGGCGT-GTACGTC-AGCAACTACCGA-CAGCGCATGGACACCACCGCGCACGTGCTCTC 1089259 Query 653062 CTACCCGCAGGTGCCGCTGGTGCAGACGGCCATGG--AGGACGTCATCGGCGC--CA--- 653114 |||||| ||| ||| || || ||| ||| | | ||| | | | |||| || Sbjct 1089258 CTACCCCCAGCAGCCTCTCGT---GACCACCAAAGCCATGACCT-ACCTGCGCTTCAAAG 1089203 Query 653115 CGC-GCCTCCCGATGGGCCAGAATGCGCGCGTGGCCATCATGAGCGACCC---CTACAAC 653170 || |||| ||| | || | |||| | ||||| ||| || || | ||||||| Sbjct 1089202 AGCTGCCTGCCG--GCTGCA-ACTGCGTG-GTGGCGATCTGCTGCTACTCGGGCTACAAC 1089147 Query 653171 CAGGAGGACTCGCTCGTGCTCAAGCAGGACTTTGTCGACCGCGGCGGCTTCCGCTCGATG 653230 |||||||||||||| | || || ||| | |||| ||||| |||||| ||||| Sbjct 1089146 CAGGAGGACTCGCTGATCCTGAACCAGTCCGCCATCGAGCGCGGTCTCTTCCGGTCGATC 1089087 Query 653231 ATCAAGCGCACCTACC 653246 || | ||||| |||| Sbjct 1089086 TTCTACCGCACGTACC 1089071 >seq5 Length=491035 Score = 87.8 bits (96), Expect = 3e-11 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 429074 CAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACTTTACGGCGCGCGC 429133 ||||||||| | ||||| || ||||||||||| || ||||| |||||||| | Sbjct 84870 CAAGGAGGGTCTCTTCCGCATGAACATGATGGGCAAGCGTGTGAACTTCGCGGCGCGCTC 84811 Query 429134 CGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGTGCCCTATGAGATCGT 429193 |||||| ||||||||| | ||||||| ||||||||||||||||| || ||| Sbjct 84810 GGTCATCGCGCCCGACCCCTACATCGACACCGACGAGGTGGGCGTGCCGCTGCAGTTCGC 84751 Query 429194 CAAGACGCTCACCTTTCCCGAGCGCGTGACG 429224 ||| |||| || || |||| ||| ||| Sbjct 84750 GAAGGAGCTCTGCTACCCGGAGCCCGTCACG 84720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916240655773706