Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq51 125 5e-24 seq52 116 2e-21 seq2 107 1e-18 >seq51 Length=900598 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||| | || | || |||||||||| ||| ||||||||| ||||| ||||| || Sbjct 383031 TCCTCCACGCAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 382972 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 || |||| | || || || |||||||| ||||| ||||| || ||||| ||| | || Sbjct 382971 AAGAGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGG 382912 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | |||||||| || | || || || ||| | || | || | |||||| Sbjct 382911 AATTCCCTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCGAC 382852 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || ||||||||||| ||||| ||||| || ||||| |||||| Sbjct 382851 ATCAAGAGTGATGGTCTTTCCAGTGAGAGTCTTAACGAAGATTTGCATG 382803 >seq52 Length=870417 Score = 116 bits (128), Expect = 2e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||| | || | || |||||||||| ||| ||||||||||||||| ||||| || Sbjct 711991 TCCTCCGCGCAGACGAAGCACCAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGA 711932 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 || |||| |||| || || |||||||| ||||| ||||| || ||||| ||| | || Sbjct 711931 AAGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAAATCAGGCGCTGCTGATCTGGGGG 711872 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCG 34927 | |||||||| || | || || || || || || || | ||| | ||| Sbjct 711871 AATTCCCTCCTTATCCTGAATCTTAGCCTTCAC--ATTCTCGATAGTGTCAGAAGACTCA 711814 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| | || |||||||| || ||||| || || || ||||| ||||| Sbjct 711813 ACATCGAGAGTGATGGTCTTCCCTGTGAGTGTTTTCACGAAGATTTGCAT 711764 >seq2 Length=1866585 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| |||||||||||||| ||||| || || | || |||| Sbjct 484742 AGTACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGTCCATCC 484801 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| || ||||||| || ||||| ||| | || | ||||||||||| Sbjct 484802 TCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 484861 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| | ||| ||||||| ||| || ||| Sbjct 484862 TGAATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGACTCCACATCAAGGGTGATCGTC 484921 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | |||||||| || || ||||| Sbjct 484922 TTTCCAGTCAAAGTCTTTACGAAAATTTGCAT 484953 Score = 100 bits (110), Expect = 2e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||||||||| ||||| || ||| |||| |||| Sbjct 1646181 AGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCC 1646122 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| ||||| ||||| || ||||| ||| | || | ||||||||||| Sbjct 1646121 TCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 1646062 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | |||| || || |||||| || | || || ||| Sbjct 1646061 TGAATCTTAGCCTTCACGTTCTCGATCGTATCGGAGGACTCGACGTCGAGAGTAATAGTC 1646002 Query 34946 TTTCC 34950 ||||| Sbjct 1646001 TTTCC 1645997 Score = 100 bits (110), Expect = 2e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||||||||| ||||| || ||| |||| |||| Sbjct 1768661 AGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCC 1768720 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| ||||| ||||| || ||||| ||| | || | ||||||||||| Sbjct 1768721 TCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 1768780 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | |||| || || |||||| || | || || ||| Sbjct 1768781 TGAATCTTAGCCTTCACGTTCTCGATCGTATCGGAGGACTCGACGTCGAGAGTAATAGTC 1768840 Query 34946 TTTCC 34950 ||||| Sbjct 1768841 TTTCC 1768845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692585653426