Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq52 82.4 6e-11 >seq52 Length=870417 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || ||||| | ||||| || ||||| || |||| ||| || Sbjct 711764 ATGCAAATCTTCGTGAAAACACTCACAGGGAAGACCATCACTCTCGATGTTGAGTCTTCT 711823 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| ||| | || || |||||| ||||| || || | ||| |||||| Sbjct 711824 GACACTATCGAGAATGTGAAGGCTAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAG 711883 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| || || || ||||| ||||| | | || | | ||||||||| Sbjct 711884 CAGCGCCTGATTTTCGCTGGAAAGCAGCTCGAGGATGGCCGCACTCTTTCTGACTACAAC 711943 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 ||||| |||||||| || | ||| ||||| | | |||| || ||| Sbjct 711944 ATTCAGAAGGAGTCCACTCTTCACCTGGTGCTTCGTCTGCGCGGAGGA 711991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876537489206