Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq51 203 2e-46 seq1 87.8 1e-11 >seq51 Length=900598 Score = 203 bits (224), Expect = 2e-46 Identities = 464/694 (67%), Gaps = 6/694 (1%) Strand=Plus/Plus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || ||||| ||||| ||||||||||| | ||||| ||| | || || | || | |||| Sbjct 102327 CGGTTATCGAAATCCTCACCTCCCAAGTGAGTATCTCCAGCAGTCGCCTTCACCTCGAAA 102386 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | ||| || || | |||| || | ||||| ||| |||||||||| ||| ||||| Sbjct 102387 ATTCCGTCCTCGATCGACAGCAGCGACACATCGAAGGTACCACCACCCAGATCGAAAATC 102446 Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 || | ||| ||| | | || || | || ||||| || |||| |||||| ||||| Sbjct 102447 AGAATGTTC--TTC-TCGCCTCCCTTCTGGTCCAGACCGTAAGCAATAGCAGCGGCAGTG 102503 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || || || ||||| | || || || || |||||||| |||| ||||| || || || Sbjct 102504 GGCTCGTTGATAATACGCATCACGTTCAGTCCAGCAATCGTTCCAGCATCCTTCGTAGCC 102563 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487 || | || |||||||| || |||||||| |||||||| || || | | || || || Sbjct 102564 TGACGCTGCGAATCGTTGAAGTATGCAGGCACAGTAATCACAGCGTTCTTCACCTCCTTG 102623 Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547 || | ||||| || | || ||||| || | | | ||| || ||||| | || Sbjct 102624 CCCAAATAAGACTCAGCAATCTGCTTCATCTTCGTCAGCACCATCGAAGAAATCTCCTCA 102683 Query 282548 GGAGAATATTGCTTGGATTCATTTTGATATGATACTTC-AAAATATGGTT--TATTACCA 282604 ||||| | ||||| || | || || || | | | | || | | | Sbjct 102684 GGAGAGAACTGCTTTCTCTCGCCCTTGTACTCCACCTCGATCACAGGCTTGCCCTCAGGA 102743 Query 282605 ACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAA 282664 | | | | | || ||||| | |||||||| |||||| ||| | || Sbjct 102744 CCTCTCTTCAGAGTGAAAGGCCAGTGCTTCATATCGCTCTGAACAGAGGCGTCGTCGAAC 102803 Query 282665 TCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGA 282724 | | |||||| | || || || || || | ||| ||||| || || | || | || Sbjct 102804 TTACGACCAATCAGACGCTTCGCGTCGAACACAGTGTTGGTAGGGTTCATAGCCACCTGG 102863 Query 282725 TATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTT 282784 | || || ||||| ||||||||| | ||||| || || || | ||||| || ||||| Sbjct 102864 TTCTTAGCAGCATCACCAATCAGACGCTCTGTATCAGTGAAAGCCACATAGGAAGGAGTG 102923 Query 282785 GTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACA 282844 || | | ||| || || || |||||||| || || || | |||||||| ||||| ||| Sbjct 102924 GTTCTCTGACCCTGGTCGTTGGCAATAATCTCCACCTTGTCGTTTTGCCAAACACCCACA 102983 Query 282845 CAACTAAAAGTTGTTCCTAAATCAATACCAATAG 282878 ||| | | ||||| || ||||||||||||| || Sbjct 102984 CAAGAATAGGTTGTACCCAAATCAATACCAACAG 103017 Score = 197 bits (218), Expect = 1e-44 Identities = 463/694 (67%), Gaps = 6/694 (1%) Strand=Plus/Plus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || ||||| ||||| ||||||||||| | ||||| ||| | || || | || | |||| Sbjct 682707 CGGTTATCGAAATCCTCACCTCCCAAGTGAGTATCTCCAGCAGTCGCCTTCACCTCGAAA 682766 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | ||| || || | |||| || | ||||| ||| |||||||||| ||| ||||| Sbjct 682767 ATTCCGTCCTCGATCGACAGCAGCGACACATCGAAGGTACCACCACCCAGATCGAAAATC 682826 Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 || | ||| ||| | || || | || ||||| || |||| |||||| ||||| Sbjct 682827 AGAATGTTC--TTC-TCACCTCCCTTCTGGTCCAGACCGTAAGCAATAGCAGCGGCAGTG 682883 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || || || ||||| | || || || || |||||||| |||| ||||| || || || Sbjct 682884 GGCTCGTTGATAATACGCATCACGTTCAGTCCAGCAATCGTTCCAGCATCCTTCGTAGCC 682943 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487 || | || |||||||| || || ||||| |||||||| || |||| | || || || Sbjct 682944 TGACGCTGCGAATCGTTGAAGTAGGCAGGCACAGTAATCACAGCATTCTTCACCTCCTTG 683003 Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547 || | ||||| || | || ||||| || | | | ||| || ||||| | || Sbjct 683004 CCCAAATAAGACTCAGCAATCTGCTTCATCTTCGTCAGCACCATCGAAGAAATCTCCTCA 683063 Query 282548 GGAGAATATTGCTTGGATTCATTTTGATATGATACTTC-AAAATATGGTT--TATTACCA 282604 ||||| | ||||| || | || || || | | | | || | | | Sbjct 683064 GGAGAGAACTGCTTTCTCTCGCCCTTGTACTCCACCTCGATCACAGGCTTGCCCTCAGGA 683123 Query 282605 ACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAA 282664 | | | | | || ||||| | |||||||| |||||| ||| | || Sbjct 683124 CCTCTCTTCAGAGTGAAAGGCCAGTGCTTCATATCGCTCTGAACAGAGGCGTCGTCGAAC 683183 Query 282665 TCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGA 282724 | | |||||| | || || || || || | ||| ||||| || || | || | || Sbjct 683184 TTACGACCAATCAGACGCTTCGCGTCGAACACAGTGTTGGTAGGGTTCATAGCCACCTGG 683243 Query 282725 TATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTT 282784 | || || ||||| ||||||||| | ||||| || || || | ||||| || ||||| Sbjct 683244 TTCTTAGCAGCATCACCAATCAGACGCTCTGTATCAGTGAAAGCCACATAGGAAGGAGTG 683303 Query 282785 GTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACA 282844 || | | ||| || || || |||||||| || || || | |||||||| ||||| ||| Sbjct 683304 GTTCTCTGACCCTGGTCGTTGGCAATAATCTCCACCTTGTCGTTTTGCCAAACACCCACA 683363 Query 282845 CAACTAAAAGTTGTTCCTAAATCAATACCAATAG 282878 ||| | | ||||| || ||||||||||||| || Sbjct 683364 CAAGAATAGGTTGTACCCAAATCAATACCAACAG 683397 >seq1 Length=1966360 Score = 87.8 bits (96), Expect = 1e-11 Identities = 200/295 (68%), Gaps = 11/295 (4%) Strand=Plus/Plus Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCC--TG-ACGTAGCTCTTACTTGGAA 282246 ||| |||||||| ||||||||||| | | ||| || || | | | | || | || Sbjct 1726780 ATTGTCAAAATCATCACCTCCCAAATGACTATCGCCATTGCATGAAAC---CACCTCAAA 1726836 Query 282247 AAGTCCATCT-TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAA 282305 | ||||| | |||| || ||||| | |||||| || ||||| || | |||| ||| Sbjct 1726837 ATTTCCATTTCTCAA-AGCCAAAATGGAGACATCAAAAGTACCACCTCCAAGATCATAAA 1726895 Query 282306 TAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAG 282365 | | | || | || || ||| || |||| | |||| ||||| ||||| |||| Sbjct 1726896 TTAAAATGTTTTTATCCGAGTGCTGG---TTCTCAAAAACATAAGCAAAGGCAGCGGCAG 1726952 Query 282366 TTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGG 282425 |||||||| | ||| | | || || ||||| |||||| || | || || || || | Sbjct 1726953 AGGGTTCATTCAGAATACGGAGGACGTTTAGACCCGCAATTGTTGCAGCGTCCTTTGTAG 1727012 Query 282426 CTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTAC 282480 | ||||| || ||| || || || |||||||| || || || || |||||| Sbjct 1727013 CCTGTCTCTGGCTATCATTGAAGTACGCAGGAACGGTGATTACAGCGCTTGTTAC 1727067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740627748828204