Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq51 95.1 1e-14 seq52 93.3 4e-14 seq2 82.4 7e-11 >seq51 Length=900598 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || | ||| ||| ||||||||||||||| || Sbjct 383000 GTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACC-GTCCTCGAGCTGCTTTCC 382942 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || |||||||| || || || || || ||||| || ||||| ||| Sbjct 382941 AGCGAAAATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATCTTGGCCTT 382882 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | ||||| | | ||| || || | |||| ||| || || || ||||| Sbjct 382881 CACGTTCTCGATGGTGTCCGAAGACTCGACATCAAGAGTGATGGTCTTTCCAGTGAGAGT 382822 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| || |||||| Sbjct 382821 CTTAACGAAGATTTGCATG 382803 >seq52 Length=870417 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || | ||| | | | |||||||||||||| || Sbjct 711960 GTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCA-TCCTCGAGCTGCTTTCC 711902 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || |||||||| || || || || || ||||| || ||||| ||| Sbjct 711901 AGCGAAAATCAGGCGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATCTTAGCCTT 711842 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | ||||| | | ||| || |||| |||| ||| || || || || || Sbjct 711841 CACATTCTCGATAGTGTCAGAAGACTCAACATCGAGAGTGATGGTCTTCCCTGTGAGTGT 711782 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| || ||||| Sbjct 711781 TTTCACGAAGATTTGCAT 711764 >seq2 Length=1866585 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| || || | || | |||||||| || || || || || |||||| Sbjct 484799 TCCTCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTG 484858 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||| | | ||| | || || | | |||||| || | ||||| Sbjct 484859 TCCTGAATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGACTCCACATCAAGGGTGATC 484918 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || |||| ||| ||||||||||| ||||| Sbjct 484919 GTCTTTCCAGTCAAAGTCTTTACGAAAATTTGCAT 484953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420473690960