Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq51 89.7 3e-13 seq2 89.7 3e-13 seq52 86.0 4e-12 >seq51 Length=900598 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | ||||| || |||||| ||| || || |||||||| || || Sbjct 383030 CCTCCACGCAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 382971 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || ||||| || ||||||| ||||||||||||| | || Sbjct 382970 AGAGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGA 382911 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || || || ||| || ||| || | || | |||||| || || || Sbjct 382910 ATTCCCTCCTTATCCTGAATCTTGGCCTTC-ACGTTCTCGATGGTGTCCGAAGACTCGAC 382852 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || || ||||| ||||| Sbjct 382851 ATCAAGAGTGATGGTCTTTCCAGTGAGAGTCTTAACGAAGATTTGCAT 382804 >seq2 Length=1866585 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| || || || || ||| | || || | || ||||| ||||| Sbjct 484763 TCCTTCTGAATGTTGTAGTCAGAAAGAGTACGTCCATCCTCGAGCTGCTTTCCAGCAAAG 484822 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||||||||||||||||| | || | || || ||||| ||| || ||| || | Sbjct 484823 ATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGAATCTTGGCCTTC-ACGTT 484881 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||| || || ||||| |||| |||||||| || || || || || ||||| Sbjct 484882 CTCGATGGTATCAGAAGACTCCACATCAAGGGTGATCGTCTTTCCAGTCAAAGTCTTTAC 484941 Query 33738 AAAGATCTGCATA 33750 || || |||||| Sbjct 484942 GAAAATTTGCATA 484954 Score = 84.2 bits (92), Expect = 1e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || | || ||| | |||||| || || || ||| || || |||||||| || | Sbjct 1646198 CACCTCCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAG 1646139 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||| ||||| | || || | || ||||| || ||||||| ||||||||||||| | | Sbjct 1646138 AGAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGG 1646079 Query 33641 GCACACCTTCTTTGTC 33656 | | || || ||||| Sbjct 1646078 GAATTCCCTCCTTGTC 1646063 Score = 84.2 bits (92), Expect = 1e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || | || ||| | |||||| || || || ||| || || |||||||| || | Sbjct 1768644 CACCTCCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAG 1768703 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||| ||||| | || || | || ||||| || ||||||| ||||||||||||| | | Sbjct 1768704 AGAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGG 1768763 Query 33641 GCACACCTTCTTTGTC 33656 | | || || ||||| Sbjct 1768764 GAATTCCCTCCTTGTC 1768779 >seq52 Length=870417 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | ||||| || |||||| ||| || || |||||||| || || Sbjct 711990 CCTCCGCGCAGACGAAGCACCAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAA 711931 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | || ||||| || ||||||| |||||||||||| | || Sbjct 711930 AGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAAATCAGGCGCTGCTGATCTGGGGGA 711871 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || || || ||| || ||| |||| || | ||||| || || || Sbjct 711870 ATTCCCTCCTTATCCTGAATCTTAGCCTTC-ACATTCTCGATAGTGTCAGAAGACTCAAC 711812 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| || || ||||| | ||||| || ||||| ||||| || Sbjct 711811 ATCGAGAGTGATGGTCTTCCCTGTGAGTGTTTTCACGAAGATTTGCATCGT 711761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703783671680