Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq52 102 2e-16 seq51 93.3 1e-13 seq2 86.0 1e-11 >seq52 Length=870417 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| |||||||| || || |||||| | || || || ||||||||| |||| Sbjct 711779 AAAACACTCACAGGGAAGACCATCACTCTCGATGTTGAGTCTTCTGACACTATCGAGAAT 711838 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || |||||| || || || | || || ||| Sbjct 711839 GTGAAGGCTAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAGCAGCGCCTGATTTTC 711898 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||||||| | || ||||| | ||| | | || |||||| | ||||| ||||| Sbjct 711899 GCTGGAAAGCAGCTCGAGGATGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCC 711958 Query 206365 ACTCTTCACCTTGT 206378 ||||||||||| || Sbjct 711959 ACTCTTCACCTGGT 711972 >seq51 Length=900598 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || |||||| | || || || ||| ||||| |||| Sbjct 382819 AAGACTCTCACTGGAAAGACCATCACTCTTGATGTCGAGTCTTCGGACACCATCGAGAAC 382878 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || |||||| || || || | || || ||| Sbjct 382879 GTGAAGGCCAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATTTTC 382938 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||||||| | || || || | ||| | | || |||||| ||||||| ||||| Sbjct 382939 GCTGGAAAGCAGCTCGAGGACGGTCGCACTCTTTCTGACTACAACATCCAGAAGGAGTCC 382998 Query 206365 ACTCTTCACCTTGT 206378 ||||||||||| || Sbjct 382999 ACTCTTCACCTGGT 383012 >seq2 Length=1866585 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| |||||||| | || ||||| |||||| || |||| || ||| Sbjct 484929 ACTGGAAAGACGATCACCCTTGATGTGGAGTCTTCTGATACCATCGAGAACGTGAAGGCC 484870 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || |||||| || || || | | ||||| || |||||| Sbjct 484869 AAGATTCAGGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTTTGATCTTTGCTGGAAAG 484810 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || |||||| | ||| | | || |||||| | ||||| || || || |||||| Sbjct 484809 CAGCTCGAGGATGGACGTACTCTTTCTGACTACAACATTCAGAAGGAATCGACCCTTCAC 484750 Query 206374 CTTGT 206378 ||||| Sbjct 484749 CTTGT 484745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181819982327734