Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq13 104 3e-16 seq35 86.0 9e-11 >seq13 Length=1458350 Score = 104 bits (114), Expect = 3e-16 Identities = 260/376 (69%), Gaps = 27/376 (7%) Strand=Plus/Plus Query 1601112 GGTAGGTGCGCTTGATCATCGAGCGGAAGCCGCCGCGGTCGACAAAGTCCTGCTTGAGCA 1601171 |||| ||||| | || ||||| |||||| ||||| |||| | ||| || || | Sbjct 1089071 GGTACGTGCGGTAGAAGATCGACCGGAAGAGACCGCGCTCGATGGCGGACTGGTTCAGGA 1089130 Query 1601172 CGAGCGAGTCCTCCTGGTTGTAG---GGGTCGCTCATGATGGCCACGCGCGCATTCTGGC 1601228 ||||||||||||||||||||| | || || ||| ||||| | |||| | || Sbjct 1089131 TCAGCGAGTCCTCCTGGTTGTAGCCCGAGTAGCAGCAGATCGCCAC-CACGCAGT-TGCA 1089188 Query 1601229 CCATCGGGAGGC-GCG---TG--GCGCCGATGACGTCCT--CCATGGCGGTCTGCACCAG 1601280 | ||| |||| || || |||| | | | ||| | | ||| |||| || || Sbjct 1089189 GC--CGGCAGGCAGCTCTTTGAAGCGCAGGT-AGGTCATGGCTTTGGTGGTC---ACGAG 1089242 Query 1601281 CGGCACCTGCGGGTAGCACAGGGCGTGCGACACCGTGTCGATGGCATGGTCGGC-GTTGA 1601339 ||| ||| |||||| | || |||||| ||||| ||| || |||| |||| Sbjct 1089243 AGGCTGCTGGGGGTAGGAGAGCACGTGCGCGGTGGTGTCCATGCGCTG-TCGGTAGTTGC 1089301 Query 1601340 GCGAC--ACGACGGCCTTGCTCTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGC 1601397 ||| || ||| || || |||||||||||| || | ||||||| |||| || |||| Sbjct 1089302 T-GACGTAC-ACGCCCATGGCCTGCTTGCCCATAGCGGACTGGTAGGTGTTTCGAGGCGA 1089359 Query 1601398 CTGGTTGTGGTTGGAAAACGGGATGATGGACGCGCAGGCGCCCAGCATGA-GCAGCGGGT 1601456 ||||||||||| || ||||| ||||| || ||||| ||||||| || | | || || | Sbjct 1089360 CTGGTTGTGGTCGGGGAACGGAATGATCGAGGCGCACACGCCCAGAATCATGGAG-GGAT 1089418 Query 1601457 GGACCTCGACGTGCGT 1601472 ||| |||| |||||| Sbjct 1089419 GGATCTCGCAGTGCGT 1089434 Score = 93.3 bits (102), Expect = 6e-13 Identities = 210/312 (67%), Gaps = 14/312 (4%) Strand=Plus/Plus Query 1600334 CCGCGTGGTCGGGCGTGAATCTTGTCGATGGCCACGTGGCGC---AGGGCCTGGTAGTAG 1600390 ||||| | ||| ||||| ||||||||| ||||| || || ||| ||||||| | Sbjct 1088271 CCGCGGGCTCGCGCGTGGATCTTGTCGT---CCACGAGGTGCTTCAGGCGCTGGTAGAAC 1088327 Query 1600391 ACCGGCGCCGTAAAGATCAACGCCTCCATGGGCTCGCCGGTGTGCGGGTGGTAGAGCACC 1600450 || || | |||| |||||||||| || |||||||| || |||||| || Sbjct 1088328 GTGGGGCCCATGAAGACGCGCGCCTCCATGCGCCGCCCGGTGTGTCCGTTGTAGAGGACT 1088387 Query 1600451 TCCTTGCCGTAGCGCTCGCATCCGTGGCGAGCCAACTCGGCGGCGACATCGTCGACGGTG 1600510 || | |||| || | | || | | || || | || || || || || || Sbjct 1088388 TCGTAGCCGCGCTTCTGGTAGCCCTCGTTGTGCAGCTTGTTGGAGATGTCCTCCACCGTC 1088447 Query 1600511 ACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCTCGCGGCAG----GCCACCTTGCC 1600566 ||| ||| || | ||||||||||||| | || | | | |||| || |||||||| Sbjct 1088448 ACGTCGCTGAACGCCGTGCCGTCGCCCTC---GCGCGC-CTGCAGCGCCGCGACCTTGCC 1088503 Query 1600567 CAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCGGGTTGAT 1600626 || || ||| || | || || |||||||| ||||| || |||||||||||||| || Sbjct 1088504 GAGCAGACACTCGATGAGCTGTCCGATGGTCATACGCGAAGGAATGGCGTGCGGGTTCAT 1088563 Query 1600627 CACAATGTCGGG 1600638 | |||||||| Sbjct 1088564 GATGATGTCGGG 1088575 >seq35 Length=1031885 Score = 86.0 bits (94), Expect = 9e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 1818079 GCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACGCCCACCTCGT 1818138 |||||||||||||||| || || || || | | | | |||||||||||||||| Sbjct 605030 GCGTCACGCGCTCGGGGAACGTCAGGATCGCCGCCAGCGACTTCGGCACGCCCACCTCGT 605089 Query 1818139 CAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGCTTGC 1818198 | ||||| ||| ||||| | | |||| || | ||| || | || || || ||||||| Sbjct 605090 CGATGTCGATCGTCGGGTCCGCGGTGATCACCGACCGCCCGCTGAAATTCACTCGCTTGC 605149 Query 1818199 CCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCT 1818243 |||| || ||||| | | |||| ||||||||||| |||| Sbjct 605150 CCATCAGGTTCCCGCGCACGCGGCCCGTCTTGCCCTTGATGCGCT 605194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177805991600748