Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_026590.1 Length=90460 Score E Sequences producing significant alignments: (Bits) Value seq16 127 1e-24 >seq16 Length=243064 Score = 127 bits (140), Expect = 1e-24 Identities = 277/409 (68%), Gaps = 22/409 (5%) Strand=Plus/Plus Query 52793 AACCCGTGCGTCGAACAGCCGTTGGAGTCATACGAAAACTGCTGTCTTGTGGAGGCGCAT 52852 ||||||||| | || ||| || ||||||||||||| ||||| || |||||| || Sbjct 31548 AACCCGTGCCTGGAGCAGTCGCTGGAGTCATACGAGCTGTGCTGCCTGGTGGAGACG--- 31604 Query 52853 TTGAACCGCGCG----GAGTCTAAAGAGGATTTTCTGCGTACCCTCAAGTTCGCTTACCT 52908 | ||||||| | | | || ||||| | ||||| || || |||||||| ||||| Sbjct 31605 -TTCCCCGCGCGGCACGCGACGAAGGAGGAGTACCTGCGGACGCTGAAGTTCGCGTACCT 31663 Query 52909 CTACGGGAAGGCTGTCACACTCTTGACCACGCCGTGGGAGAAGACGAACGCGGTGATGCT 52968 |||| |||| | || || || | |||| ||| | |||||||| |||||||| Sbjct 31664 GTACGCGAAGACGGTGACGCTGCGCATGACGCACTGGCCGGAGACGAACCGCGTGATGCT 31723 Query 52969 TCGCAATCGCCGTATCGGGCTTTCTACGACTGGTGTGGCAGGGTT--TGTGGAAGAACAC 53026 || || || || |||||| || || || ||||| | || || ||||| ||| Sbjct 31724 GCGGAACCGGCGGATCGGGTGCTCGGTGAGCGGCGTGGCGGACTTCCTGGGGAAG--CAC 31781 Query 53027 AGTCTGGCCGAGTATCGGGCGTGGGCCGATGAGGGTTACAAGCGGGTGTCTCACTGGGAT 53086 || |||| ||| ||| |||| || ||||| ||| | |||| ||||||| Sbjct 31782 AGCCTGGAGGAGCTGCGGCAGTGGCTGGACGAGGGCTACGCGACGGTGCAGCACTGGG-- 31839 Query 53087 ACGACGTATTCTG--AGTGGTTGGGCATTCGTGAGTCGATTCGTAAGACGA---CGGTGA 53141 |||| || | | | | ||||| |||| | |||||| ||||||| |||||| Sbjct 31840 ACGAGGTGTACAGCAACTGGTTCTGCATCCCGCGGTCGAT---CAAGACGACCTCGGTGA 31896 Query 53142 AGCCTTCGGGTTCGGTGTCGTTGTTGTCGGGTGCTTCGCCTGGTGTGCA 53190 |||| ||||| |||||||| || || |||| | |||| || |||| Sbjct 31897 AGCCGTCGGGGACGGTGTCGCTGCTGGCGGGCTCCACGCCGGGCATGCA 31945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 289347009573374