Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq51 138 1e-27 seq52 129 6e-25 seq2 122 9e-23 >seq51 Length=900598 Score = 138 bits (152), Expect = 1e-27 Identities = 172/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 134479 TTGCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGT 134538 |||||| ||||| | || || | ||| ||||| || ||||| ||||| || ||||||| Sbjct 383036 TTGCCT--CCTCCACGCAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGT 382979 Query 134539 AGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGAT 134598 |||| || ||| || ||| |||||||| || || || ||||||| ||||||||||| Sbjct 382978 AGTCAGAAAGAGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGAT 382919 Query 134599 CGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACG 134658 | || || || || || || || ||||| || || || || | ||||| || | Sbjct 382918 CTGGGGGAATTCCCTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAG 382859 Query 134659 ATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || ||||| ||||| || || || | ||| |||||||| |||||||| Sbjct 382858 ACTCGACATCAAGAGTGATGGTCTTTCCAGTGAGAGTCTTAACGAAGATTTGCAT 382804 >seq52 Length=870417 Score = 129 bits (142), Expect = 6e-25 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 134479 TTGCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGT 134538 |||||| ||||| | || || | ||| ||||| || ||||| ||||| |||||||||| Sbjct 711996 TTGCCT--CCTCCGCGCAGACGAAGCACCAGGTGAAGAGTGGACTCCTTCTGAATGTTGT 711939 Query 134539 AGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGAT 134598 |||| || ||| | || |||||||| || || || ||||||| |||||||||| Sbjct 711938 AGTCAGAAAGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAAATCAGGCGCTGCTGAT 711879 Query 134599 CGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACG 134658 | || || || || || || || ||||| || || || || | ||||| || | Sbjct 711878 CTGGGGGAATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCGATAGTGTCAGAAG 711819 Query 134659 ATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || |||||||| ||||| || || || | ||||| ||||| |||||||| Sbjct 711818 ACTCAACATCGAGAGTGATGGTCTTCCCTGTGAGTGTTTTCACGAAGATTTGCAT 711764 >seq2 Length=1866585 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || |||||||| |||||||||||||| || || | || ||| Sbjct 484745 ACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGTCCATCCTCG 484804 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || ||||| ||||||||||||||||| || || || || || || || ||| Sbjct 484805 AGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGA 484864 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || || | || || || || ||||| || || || || || || Sbjct 484865 ATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGACTCCACATCAAGGGTGATCGTCTTT 484924 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || ||||| || |||||||||||||| || Sbjct 484925 CCAGTCAAAGTCTTTACGAAAATTTGCATATT 484956 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | ||| | ||| || || || ||||| |||||||||||||| Sbjct 1646196 CCTCCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAG 1646137 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| || || || ||||||| |||||||||||| || || Sbjct 1646136 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGA 1646077 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || || || || | || ||||| || || ||| Sbjct 1646076 ATTCCCTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCGATCGTATCGGAGGACTCGACG 1646017 Query 134667 TCGAGAGTAATGGTTTTACC 134686 ||||||||||| || || || Sbjct 1646016 TCGAGAGTAATAGTCTTTCC 1645997 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | ||| | ||| || || || ||||| |||||||||||||| Sbjct 1768646 CCTCCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAG 1768705 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| || || || ||||||| |||||||||||| || || Sbjct 1768706 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGA 1768765 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || || || || | || ||||| || || ||| Sbjct 1768766 ATTCCCTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCGATCGTATCGGAGGACTCGACG 1768825 Query 134667 TCGAGAGTAATGGTTTTACC 134686 ||||||||||| || || || Sbjct 1768826 TCGAGAGTAATAGTCTTTCC 1768845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398058856080