Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq52 98.7 8e-16 seq51 95.1 1e-14 >seq52 Length=870417 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||||| || | |||| || | || || || || ||||| |||||||| Sbjct 711990 CCTCCGCGCAGACGAAGCACCAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAA 711931 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || |||||||| || || ||| |||| || ||||| ||||| || || Sbjct 711930 AGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAAATCAGGCGCTGCTGATCTGGGGGA 711871 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| ||||| |||| | || | |||||| | | ||||| Sbjct 711870 ATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCGATAGTGTCAGAAGACTCAACA 711811 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | || || || || |||||||| ||||||||||| Sbjct 711810 TCGAGAGTGATGGTCTTCCCTGTGAGTGTTTTCACGAAGATTTGCAT 711764 >seq51 Length=900598 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| |||| || | |||| || | || || || || || || |||||||| Sbjct 383030 CCTCCACGCAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 382971 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| |||| |||||||| || || ||| |||| |||||||| ||||| || || Sbjct 382970 AGAGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGA 382911 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| |||||| |||| | | || | ||||| | | || || Sbjct 382910 ATTCCCTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCGACA 382851 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | || || || ||||| || || ||||||||||| Sbjct 382850 TCAAGAGTGATGGTCTTTCCAGTGAGAGTCTTAACGAAGATTTGCAT 382804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934120340048