Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 190 2e-43 seq52 187 3e-42 seq51 187 3e-42 >seq2 Length=1866585 Score = 190 bits (210), Expect = 2e-43 Identities = 191/246 (78%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 27390 CAGAAATATTACTATAAT--GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACT 27447 || |||||| | |||||| |||||| || || ||||| | || || ||||| || || Sbjct 484970 CATAAATAT-ATTATAATATGCAAATTTTCGTAAAGACTTTGACTGGAAAGACGATCACC 484912 Query 27448 CTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAG 27507 ||||| || ||||| ||||| ||| | || ||||||| || ||||||||||||||| Sbjct 484911 CTTGATGTGGAGTCTTCTGATACCATCGAGAACGTGAAGGCCAAGATTCAGGACAAGGAG 484852 Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 |||||||| ||||| ||||||||| | || |||||||| ||||| |||||||||| ||| Sbjct 484851 GGAATTCCCCCAGATCAGCAGCGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGACGT 484792 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || | ||||| || | || |||||||| || ||||| || || | ||||| ||| Sbjct 484791 ACTCTTTCTGACTACAACATTCAGAAGGAATCGACCCTTCACCTTGTACTTCGTCTGCGC 484732 Query 27628 GGTGGA 27633 |||||| Sbjct 484731 GGTGGA 484726 Score = 149 bits (164), Expect = 7e-31 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || |||||||||||||| || || ||||| |||| || | || |||||||||| Sbjct 1645997 GGAAAGACTATTACTCTCGACGTCGAGTCCTCCGATACGATCGAGAACGTGAAGGCTAAG 1646056 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||| Sbjct 1646057 ATTCAGGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATTTTCGCTGGAAAGCAG 1646116 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || ||||||| || ||||| | ||||| || | || ||||| || || || || | Sbjct 1646117 CTTGAGGATGGCCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTGCACTTG 1646176 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 || | ||||| || || || Sbjct 1646177 GTGCTCCGTCTGCGTGGAGG 1646196 Score = 149 bits (164), Expect = 7e-31 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || |||||||||||||| || || ||||| |||| || | || |||||||||| Sbjct 1768845 GGAAAGACTATTACTCTCGACGTCGAGTCCTCCGATACGATCGAGAACGTGAAGGCTAAG 1768786 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||| Sbjct 1768785 ATTCAGGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATTTTCGCTGGAAAGCAG 1768726 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || ||||||| || ||||| | ||||| || | || ||||| || || || || | Sbjct 1768725 CTTGAGGATGGCCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTGCACTTG 1768666 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 || | ||||| || || || Sbjct 1768665 GTGCTCCGTCTGCGTGGAGG 1768646 >seq52 Length=870417 Score = 187 bits (206), Expect = 3e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || || || || ||||| || ||||| || |||||||| | Sbjct 711764 ATGCAAATCTTCGTGAAAACACTCACAGGGAAGACCATCACTCTCGATGTTGAGTCTTCT 711823 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| |||||||||| |||||||| |||||||||||||| ||||| ||| Sbjct 711824 GACACTATCGAGAATGTGAAGGCTAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAG 711883 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| ||||| ||||| |||||||||| || || || | ||||| || Sbjct 711884 CAGCGCCTGATTTTCGCTGGAAAGCAGCTCGAGGATGGCCGCACTCTTTCTGACTACAAC 711943 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||| ||||||||||| || || | ||||| ||||| ||| Sbjct 711944 ATTCAGAAGGAGTCCACTCTTCACCTGGTGCTTCGTCTGCGCGGAGGA 711991 >seq51 Length=900598 Score = 187 bits (206), Expect = 3e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || || || ||||| || |||||||| || ||||| Sbjct 382804 ATGCAAATCTTCGTTAAGACTCTCACTGGAAAGACCATCACTCTTGATGTCGAGTCTTCG 382863 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || |||||||| |||||||||||||| ||||| ||| Sbjct 382864 GACACCATCGAGAACGTGAAGGCCAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAG 382923 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| ||||| ||||| |||||||| | ||| || || | ||||| || Sbjct 382924 CAGCGTCTGATTTTCGCTGGAAAGCAGCTCGAGGACGGTCGCACTCTTTCTGACTACAAC 382983 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| ||||||||||| || || | ||||| || || ||| Sbjct 382984 ATCCAGAAGGAGTCCACTCTTCACCTGGTGCTCCGTCTGCGTGGAGGA 383031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310015040480