Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-16 >seq2 Length=1866585 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 27015 GGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAA 27074 || ||| |||||||||| || || || | ||||| |||| |||| || || || Sbjct 1645997 GGAAAGACTATTACTCTCGACGTCGAGTCCTCCGATACGATCGAGAACGTGAAGGCTAAG 1646056 Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 ||||| ||||| || || || || || ||||| |||||| | || | ||| || || || Sbjct 1646057 ATTCAGGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATTTTCGCTGGAAAGCAG 1646116 Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 | || || | ||| | || || ||||||||||| |||||||||||| | || ||| Sbjct 1646117 CTTGAGGATGGCCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTGCACTTG 1646176 Query 27195 GTTTTGCGTTTGCGGGGTGG 27214 || | ||| |||| || || Sbjct 1646177 GTGCTCCGTCTGCGTGGAGG 1646196 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 27015 GGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAA 27074 || ||| |||||||||| || || || | ||||| |||| |||| || || || Sbjct 1768845 GGAAAGACTATTACTCTCGACGTCGAGTCCTCCGATACGATCGAGAACGTGAAGGCTAAG 1768786 Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 ||||| ||||| || || || || || ||||| |||||| | || | ||| || || || Sbjct 1768785 ATTCAGGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATTTTCGCTGGAAAGCAG 1768726 Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 | || || | ||| | || || ||||||||||| |||||||||||| | || ||| Sbjct 1768725 CTTGAGGATGGCCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTGCACTTG 1768666 Query 27195 GTTTTGCGTTTGCGGGGTGG 27214 || | ||| |||| || || Sbjct 1768665 GTGCTCCGTCTGCGTGGAGG 1768646 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| ||| |||| || ||| | || || ||||| ||||| | || Sbjct 484953 ATGCAAATTTTCGTAAAGACTTTGACTGGAAAGACGATCACCCTTGATGTGGAGTCTTCT 484894 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || || ||||| ||||| || || || || || ||||| Sbjct 484893 GATACCATCGAGAACGTGAAGGCCAAGATTCAGGACAAGGAGGGAATTCCCCCAGATCAG 484834 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || || || || | || || | || |||| || |||||| Sbjct 484833 CAGCGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGACGTACTCTTTCTGACTACAAC 484774 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| ||||| |||||| | || | || | ||| |||| ||||| Sbjct 484773 ATTCAGAAGGAATCGACCCTTCACCTTGTACTTCGTCTGCGCGGTGG 484727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918106430080