Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq51 163 7e-35 seq52 158 3e-33 seq2 158 3e-33 >seq51 Length=900598 Score = 163 bits (180), Expect = 7e-35 Identities = 171/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || ||||||||||||||||| || |||||||| || || | ||| Sbjct 383028 TCCACGCAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAG 382969 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | || || || |||||||| || ||||| || || || || || || || |||| Sbjct 382968 AGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGAAT 382909 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| ||||| ||||| ||||| |||||||| ||||||||||| || || || || Sbjct 382908 TCCCTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCGACATC 382849 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| |||||||| ||||||||||| || || | ||||| Sbjct 382848 AAGAGTGATGGTCTTTCCAGTGAGAGTCTTAACGAAGATTTGCAT 382804 >seq52 Length=870417 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||||||||||||||| || || ||||| || || | ||| || | ||||| Sbjct 711975 AGCACCAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCC 711916 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||| || ||||| || || || || |||| ||| ||||| ||| Sbjct 711915 TCGAGCTGCTTTCCAGCGAAAATCAGGCGCTGCTGATCTGGGGGAATTCCCTCCTTATCC 711856 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || ||||| |||||||| ||||| ||||||||||| ||| Sbjct 711855 TGAATCTTAGCCTTCACATTCTCGATAGTGTCAGAAGACTCAACATCGAGAGTGATGGTC 711796 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || || || | ||||| Sbjct 711795 TTCCCTGTGAGTGTTTTCACGAAGATTTGCAT 711764 >seq2 Length=1866585 Score = 158 bits (174), Expect = 3e-33 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || || || || || ||||| || || | ||| || | |||||| Sbjct 484742 AGTACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGTCCATCC 484801 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| | || || || || || |||| ||| ||||||||| Sbjct 484802 TCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 484861 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||||| |||||||| ||||| || || || || ||||||||| Sbjct 484862 TGAATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGACTCCACATCAAGGGTGATCGTC 484921 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTAT 211119 ||||| || | ||||||||| || | ||||| |||| Sbjct 484922 TTTCCAGTCAAAGTCTTTACGAAAATTTGCATATTAT 484958 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | ||| || || ||||| || || ||||| || || | || Sbjct 1646194 TCCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAGAG 1646135 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| || |||||||| || ||||| || || || || || || || |||| Sbjct 1646134 GGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGAAT 1646075 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| ||||||||||| ||||| |||||||| ||||| || || ||| || || || Sbjct 1646074 TCCCTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCGATCGTATCGGAGGACTCGACGTC 1646015 Query 211070 GAGAGTGATCGTCTTTCC 211087 |||||| || |||||||| Sbjct 1646014 GAGAGTAATAGTCTTTCC 1645997 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | ||| || || ||||| || || ||||| || || | || Sbjct 1768648 TCCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAGAG 1768707 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| || |||||||| || ||||| || || || || || || || |||| Sbjct 1768708 GGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGAAT 1768767 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| ||||||||||| ||||| |||||||| ||||| || || ||| || || || Sbjct 1768768 TCCCTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCGATCGTATCGGAGGACTCGACGTC 1768827 Query 211070 GAGAGTGATCGTCTTTCC 211087 |||||| || |||||||| Sbjct 1768828 GAGAGTAATAGTCTTTCC 1768845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151198011710