Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq52 93.3 3e-14 >seq52 Length=870417 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| ||||| || || || ||||||||||| ||||| || | Sbjct 711764 ATGCAAATCTTCGTGAAAACACTCACAGGGAAGACCATCACTCTCGATGTTGAGTCTTCT 711823 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || | || ||| || || || || | || |||||||| Sbjct 711824 GACACTATCGAGAATGTGAAGGC-TAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCA 711882 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || || || || || || || | |||||| | || ||||| Sbjct 711883 GCAGCGCCTGATTTTCGCTGGAAAGCAGCTCGAGGATGGCCGCACTCTTTCTGACTACAA 711942 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 711943 CATTCAGAAGGAGTCCAC 711960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009377547432