Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2 140 8e-28 seq51 116 9e-21 seq27 102 2e-16 >seq2 Length=1866585 Score = 140 bits (154), Expect = 8e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| || || ||||| || || | ||||| || | | ||| | ||||| Sbjct 484742 AGTACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGTCCATCC 484801 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| | || || || || || ||||| || |||||||| Sbjct 484802 TCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 484861 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| |||||||| || || | ||||| || | ||||||||| Sbjct 484862 TGAATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGACTCCACATCAAGGGTGATCGTC 484921 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTAT 225718 || || |||||||| |||| ||| | |||||| |||| Sbjct 484922 TTTCCAGTCAAAGTCTTTACGAAAATTTGCATATTAT 484958 >seq51 Length=900598 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| |||||||| || || |||| ||||| || | | ||| | || || Sbjct 383015 AGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCGTCC 382956 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||| || || || || || || || ||||| || ||||| || Sbjct 382955 TCGAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCC 382896 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| ||||||||||| || | || || || | ||||| ||| Sbjct 382895 TGAATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCGACATCAAGAGTGATGGTC 382836 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| || | ||| | |||||| Sbjct 382835 TTTCCAGTGAGAGTCTTAACGAAGATTTGCAT 382804 >seq27 Length=29948 Score = 102 bits (112), Expect = 2e-16 Identities = 109/142 (77%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794 |||||||||||| ||| |||| |||||||||||| |||||||| || || || Sbjct 12448 TTGGTAAGATTCCACGCGGACTATCGGATTAAACCACATGCTCCACCGTACGTATAAGCT 12507 Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTT-ACG 7853 |||||| || |||||||||| ||||||||||| || | | |||| | ||||||| ||| Sbjct 12508 CCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTTTTACTCCCCAGGCGAAATATTTAACG 12567 Query 7854 CGTTAGCTTAATTAATATAAAA 7875 |||| ||| || |||| ||| Sbjct 12568 TGTTAACTT--TTTATATTAAA 12587 Score = 91.5 bits (100), Expect = 4e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 372628 TAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAA 372687 ||| | || || |||||||||||||||| ||||||||||||||| ||||| | |||| | Sbjct 10146 TAAAATAAAAGGGGGTAGCGACTGTTTAATAAAAACACAGGACTTTGCTAAATCGTAAGA 10087 Query 372688 CGATGTATAGGGTCTGACAC 372707 |||||||| |||||||||| Sbjct 10086 TGATGTATAAGGTCTGACAC 10067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530374917476