Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2 181 2e-40 seq51 170 4e-37 seq52 152 1e-31 seq54 109 1e-18 seq1 87.8 4e-12 >seq2 Length=1866585 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| |||||||| || || | || ||| || || ||||||||||||| | Sbjct 484727 CCACCGCGCAGACGAAGTACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAA 484786 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || |||||||| || || || || |||||||||||||| || || || ||| Sbjct 484787 AGAGTACGTCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCTGGGGGA 484846 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| || || ||| | ||||| || || |||| || || Sbjct 484847 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGACTCCACA 484906 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| || ||||||||||| ||||| || ||||| || Sbjct 484907 TCAAGGGTGATCGTCTTTCCAGTCAAAGTCTTTACGAAAATTTGCATATT 484956 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| || || |||| || | || || || || ||||||||||||| Sbjct 1646197 ACCTCCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGA 1646138 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || || |||| ||| || || || || Sbjct 1646137 GAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGG 1646078 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| || || ||| | ||||| || || || | ||||| Sbjct 1646077 AATTCCCTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCGATCGTATCGGAGGACTCGAC 1646018 Query 283052 TTCGAGAGTGATCGTCTTACC 283072 |||||||| || ||||| || Sbjct 1646017 GTCGAGAGTAATAGTCTTTCC 1645997 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| || || |||| || | || || || || ||||||||||||| Sbjct 1768645 ACCTCCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGA 1768704 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || || |||| ||| || || || || Sbjct 1768705 GAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGG 1768764 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| || || ||| | ||||| || || || | ||||| Sbjct 1768765 AATTCCCTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCGATCGTATCGGAGGACTCGAC 1768824 Query 283052 TTCGAGAGTGATCGTCTTACC 283072 |||||||| || ||||| || Sbjct 1768825 GTCGAGAGTAATAGTCTTTCC 1768845 >seq51 Length=900598 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | ||| || || |||||||||||||||| | Sbjct 383030 CCTCCACGCAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 382971 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| || || || || || || |||| ||| || || || ||| Sbjct 382970 AGAGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGA 382911 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || || ||||| || || ||| | ||||| |||||||||| ||||| Sbjct 382910 ATTCCCTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCGACA 382851 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || || | |||||||||||| || ||||| Sbjct 382850 TCAAGAGTGATGGTCTTTCCAGTGAGAGTCTTAACGAAGATTTGCAT 382804 >seq52 Length=870417 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || ||||| ||||| ||||| || | ||| || || || ||||||||||||| | Sbjct 711990 CCTCCGCGCAGACGAAGCACCAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAA 711931 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || || || |||| || || || || ||| Sbjct 711930 AGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAAATCAGGCGCTGCTGATCTGGGGGA 711871 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || || ||||| || || || | ||||||||||| |||| || || Sbjct 711870 ATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCGATAGTGTCAGAAGACTCAACA 711811 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || || | || || ||||| || ||||| Sbjct 711810 TCGAGAGTGATGGTCTTCCCTGTGAGTGTTTTCACGAAGATTTGCAT 711764 >seq54 Length=642864 Score = 109 bits (120), Expect = 1e-18 Identities = 197/286 (69%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 273831 CCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCC 273890 || ||||||||| | || | | | || |||||||| || ||| | ||||| ||| Sbjct 344542 CCGAACTGACCCGCAGGGACGAACAGATTGATGTTGTTCGATCCCACGAAGTCCTGCGCC 344483 Query 273891 ATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCG 273950 || | ||| || | | |||||| ||| |||||||||||||| ||| |||| | Sbjct 344482 ATTCCGATGATGGTGTCGTTGAGGGATTGCTCTCCGTGGTGATAGGCAGCGTGCTCGGAG 344423 Query 273951 ATATAACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCG--G 274008 | ||| ||| ||||||| | || || | ||| || | ||||||||||| ||| | Sbjct 344422 ACATAGCCAGAGAACTGAACCACTTTGATTTCGGAGGTGAGCTTTCGCTTGAAGGCGCCG 344363 Query 274009 AATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACTGCGTT 274068 || | | || || ||||| || ||||||| || || ||||| | ||||| ||| Sbjct 344362 AAGAGA--ACTTTGCGCTGGGAAGGCTTGAGACCGTCCACGACGCAGGGAATGGAGCGAG 344305 Query 274069 CCAAATCATACCGAGAGAACAAAATCAGTTCCTTGTCAATGAAGTC 274114 | ||| || || |||||| ||||| || ||||| |||||||| Sbjct 344304 CGTTATCGTAGCGGGAGAACTGGATCAGCTCTTTGTCCATGAAGTC 344259 >seq1 Length=1966360 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/198 (71%), Gaps = 10/198 (5%) Strand=Plus/Minus Query 313393 CCTTCATCACGGTCATCTTATTCTCGGTCAGTGTACCGGTCTTATCACTCAGGAGCA--T 313450 ||| |||||||||||||| |||| ||||| || || |||||||| ||||| | Sbjct 87716 CCTGCATCACGGTCATCTGGTTCTGCGTCAGCGTTCCCGTCTTATCC-----GAGCAAAT 87662 Query 313451 GGAGGT-GCTAC--CCAGGGTCTCGCAAGCAGACAGATGGCGCACGAAGAGGTTATCGTT 313507 | | | ||| | ||| |||||||||||| || || ||||| ||| |||||| || Sbjct 87661 CGTGTTCGCTCCTCCCATGGTCTCGCAAGCGTTCAAGTGACGCACCAAGTTGTTATCCTT 87602 Query 313508 CATCATCTTCTTGACCGAAGTAGCTAGAGTAATCAAAACTGCGGCGGGAAGACCCTCGGG 313567 |||||| ||| |||||| || |||| ||| || || ||| ||||||||||| Sbjct 87601 CATCATACGCTTCACCGAATAGGCGAGAGCGATCGTGACGGCCAAGGGCAGACCCTCGGG 87542 Query 313568 GAGACCAACGACCAGGAT 313585 | | |||||||| || Sbjct 87541 AATGGCGACGACCAGAAT 87524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738475787316