Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq51 147 2e-30 seq2 120 2e-22 seq52 118 8e-22 >seq51 Length=900598 Score = 147 bits (162), Expect = 2e-30 Identities = 177/238 (74%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || | ||| | | |||||||||||| ||| |||||| ||||||||||| || | Sbjct 383031 TCCTCCACGCAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 382972 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || ||| |||| || |||||||| || || || |||| |||||||||||||| || Sbjct 382971 AAGAGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGG 382912 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| ||||| ||||| |||| | |||||||| | || || | Sbjct 382911 AATTCCCTCCTTATCCTGAATCTTGGCCTTCAC-GTTCTCGATGGTGTCCGAAGACTCGA 382853 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAAT 44346 | || | || || |||||||| ||||| ||||| ||||||||||||||| | |||| Sbjct 382852 CATCAAGAGTGATGGTCTTTCCAGTGAGAGTCTTAACGAAGATTTGCATGCTTCGAAT 382795 >seq2 Length=1866585 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || ||||| || |||||||| || | || || | || || Sbjct 484745 ACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGTCCATCCTCG 484804 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || ||||||||||||||||||||||||| || | || ||||| ||| Sbjct 484805 AGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGA 484864 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | |||| | ||||| || | || ||||| || | || |||||||| Sbjct 484865 ATCTTGGCCTTC-ACGTTCTCGATGGTATCAGAAGACTCCACATCAAGGGTGATCGTCTT 484923 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | ||||| ||||| |||||||| Sbjct 484924 TCCAGTCAAAGTCTTTACGAAAATTTGCAT 484953 Score = 95.1 bits (104), Expect = 9e-15 Identities = 133/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || |||||| || |||||||| || | ||| ||| | || || Sbjct 1646179 CACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTC 1646120 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || || |||| |||||||||||||| || | || ||||| ||| Sbjct 1646119 AAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTG 1646060 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| | |||| | || || |||| ||| || || || | ||||| |||| Sbjct 1646059 AATCTTAGCCTTC-ACGTTCTCGATCGTATCGGAGGACTCGACGTCGAGAGTAATAGTCT 1646001 Query 44307 TTCC 44310 |||| Sbjct 1646000 TTCC 1645997 Score = 95.1 bits (104), Expect = 9e-15 Identities = 133/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || |||||| || |||||||| || | ||| ||| | || || Sbjct 1768663 CACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTC 1768722 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || || |||| |||||||||||||| || | || ||||| ||| Sbjct 1768723 AAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTG 1768782 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| | |||| | || || |||| ||| || || || | ||||| |||| Sbjct 1768783 AATCTTAGCCTTC-ACGTTCTCGATCGTATCGGAGGACTCGACGTCGAGAGTAATAGTCT 1768841 Query 44307 TTCC 44310 |||| Sbjct 1768842 TTCC 1768845 >seq52 Length=870417 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || | ||| | | |||||||||||| ||| |||||| || |||||||| || | Sbjct 711991 TCCTCCGCGCAGACGAAGCACCAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGA 711932 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || ||| | || || |||||||| || || || |||| ||||||||||||| || Sbjct 711931 AAGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAAATCAGGCGCTGCTGATCTGGGGG 711872 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| ||||| ||||| | | || ||||| | || || || Sbjct 711871 AATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCGATAGTGTCAGAAGACTCAAC 711812 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || || ||||| || ||||| || ||||||||||||||||| Sbjct 711811 ATCGAGAGTGATGGTCTTCCCTGTGAGTGTTTTCACGAAGATTTGCAT 711764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990163081318