Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 159 8e-34 seq52 141 2e-28 seq51 141 2e-28 >seq2 Length=1866585 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || ||||| ||||||||||| || ||||| || || Sbjct 484950 CAAATTTTCGTAAAGACTTTGACTGGAAAGACGATCACCCTTGATGTGGAGTCTTCTGAT 484891 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || |||||||||||||| || ||||| || || || ||||| Sbjct 484890 ACCATCGAGAACGTGAAGGCCAAGATTCAGGACAAGGAGGGAATTCCCCCAGATCAGCAG 484831 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| |||||||| |||||| | |||||| | || || ||| | Sbjct 484830 CGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGACGTACTCTTTCTGACTACAACATT 484771 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || || ||||| Sbjct 484770 CAGAAGGAATCGACCCTTCACCTTGT 484745 Score = 111 bits (122), Expect = 4e-19 Identities = 135/183 (74%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 ||||||| || || || ||||| || || ||| || || ||||||||||| || | Sbjct 1645995 CAGGAAAGACTATTACTCTCGACGTCGAGTCCTCCGATACGATCGAGAACGTGAAGGCTA 1646054 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 ||||||||||||| || ||||| || || || ||||| || || || ||||| ||||| | Sbjct 1646055 AGATTCAGGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATTTTCGCTGGAAAGC 1646114 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 |||| || ||||| | || || | || || ||| | || || || || || ||||| | Sbjct 1646115 AGCTTGAGGATGGCCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTGCA-C 1646173 Query 178126 TTG 178128 ||| Sbjct 1646174 TTG 1646176 Score = 111 bits (122), Expect = 4e-19 Identities = 135/183 (74%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 ||||||| || || || ||||| || || ||| || || ||||||||||| || | Sbjct 1768847 CAGGAAAGACTATTACTCTCGACGTCGAGTCCTCCGATACGATCGAGAACGTGAAGGCTA 1768788 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 ||||||||||||| || ||||| || || || ||||| || || || ||||| ||||| | Sbjct 1768787 AGATTCAGGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATTTTCGCTGGAAAGC 1768728 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 |||| || ||||| | || || | || || ||| | || || || || || ||||| | Sbjct 1768727 AGCTTGAGGATGGCCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTGCA-C 1768669 Query 178126 TTG 178128 ||| Sbjct 1768668 TTG 1768666 >seq52 Length=870417 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| |||||||| || || ||||| ||||| || || || ||| Sbjct 711767 CAAATCTTCGTGAAAACACTCACAGGGAAGACCATCACTCTCGATGTTGAGTCTTCTGAC 711826 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||||||||| || || ||||| || || || ||||| Sbjct 711827 ACTATCGAGAATGTGAAGGCTAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAGCAG 711886 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| ||||| |||||||| ||||| | |||||| | || || ||| | Sbjct 711887 CGCCTGATTTTCGCTGGAAAGCAGCTCGAGGATGGCCGCACTCTTTCTGACTACAACATT 711946 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 711947 CAGAAGGAGTCCACTCTTCACCTGGT 711972 >seq51 Length=900598 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || |||||||| ||||| || ||||| || || || || || ||| Sbjct 382807 CAAATCTTCGTTAAGACTCTCACTGGAAAGACCATCACTCTTGATGTCGAGTCTTCGGAC 382866 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||||||||| || || ||||| || || || ||||| Sbjct 382867 ACCATCGAGAACGTGAAGGCCAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAGCAG 382926 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| ||||| |||||||| || || | |||||| | || || ||| || Sbjct 382927 CGTCTGATTTTCGCTGGAAAGCAGCTCGAGGACGGTCGCACTCTTTCTGACTACAACATC 382986 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 382987 CAGAAGGAGTCCACTCTTCACCTGGT 383012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730367168476