Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq52 131 2e-25 seq51 123 2e-23 seq2 116 3e-21 >seq52 Length=870417 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || ||||| ||||| | |||||| || || ||| ||||||||||||||| ||||| Sbjct 711993 CCTCCTCCGCGCAGACGAAGCACCAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCA 711934 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| | || ||||||||||| || ||||| ||||||||||| || || | | Sbjct 711933 GAAAGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAAATCAGGCGCTGCTGATCTGGG 711874 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTC 41811 |||| | |||||| ||| ||| | || | ||||| | | |||||| ||||| Sbjct 711873 GGAATTCCCTCCTTATCC-TGAATCTTAGCCTTCACATTCTCGATAGTGTCAGAAGACTC 711815 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || || || || || || || || ||||| || ||||| Sbjct 711814 AACATCGAGAGTGATGGTCTTCCCTGTGAGTGTTTTCACGAAGATTTGCAT 711764 >seq51 Length=900598 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||| | |||||| || || ||| ||||||||| ||||| ||||| Sbjct 383033 CCTCCTCCACGCAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCA 382974 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| |||| ||||||||||| || ||||| ||||| ||||| || || | | Sbjct 382973 GAAAGAGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGG 382914 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTC 41811 |||| | |||||| ||| ||| | || | ||||| | | ||||| ||||| Sbjct 382913 GGAATTCCCTCCTTATCC-TGAATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTC 382855 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || | || || || || || || || ||||| ||||| || |||||| Sbjct 382854 GACATCAAGAGTGATGGTCTTTCCAGTGAGAGTCTTAACGAAGATTTGCATG 382803 >seq2 Length=1866585 Score = 116 bits (128), Expect = 3e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || || |||||||||||||| ||||| || Sbjct 484727 CCACCGCGCAGACGAAGTACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAA 484786 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||||||||| || || || |||| ||||| || || | |||| Sbjct 484787 AGAGTACGTCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCTGGGGGA 484846 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || | ||||| | | || || |||||||| Sbjct 484847 ATTCCCTCCTTGTCC-TGAATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGACTCCAC 484905 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTAT 41867 || | || ||||| || || |||| |||||||||||||| ||||| |||| Sbjct 484906 ATCAAGGGTGATCGTCTTTCCAGTCAAAGTCTTTACGAAAATTTGCATATTAT 484958 Score = 116 bits (128), Expect = 3e-21 Identities = 121/156 (78%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || ||||| | ||||| ||||| || ||||||||||||||| ||||| Sbjct 1646200 ACCACCTCCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTC 1646141 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 ||||||||||| | || || |||||||| || ||||| ||||| ||||| || || | Sbjct 1646140 AGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGG 1646081 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCA 41786 ||||| | |||||||||| ||| | || | ||||| Sbjct 1646080 GGGAATTCCCTCCTTGTCC-TGAATCTTAGCCTTCA 1646046 Score = 116 bits (128), Expect = 3e-21 Identities = 121/156 (78%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || ||||| | ||||| ||||| || ||||||||||||||| ||||| Sbjct 1768642 ACCACCTCCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTC 1768701 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 ||||||||||| | || || |||||||| || ||||| ||||| ||||| || || | Sbjct 1768702 AGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGG 1768761 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCA 41786 ||||| | |||||||||| ||| | || | ||||| Sbjct 1768762 GGGAATTCCCTCCTTGTCC-TGAATCTTAGCCTTCA 1768796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303687944800