Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3 136 8e-27 seq5 132 1e-25 seq1 125 2e-23 seq115 93.3 9e-14 seq2 86.0 1e-11 seq385 84.2 5e-11 seq112 84.2 5e-11 seq91 84.2 5e-11 >seq3 Length=4400433 Score = 136 bits (150), Expect = 8e-27 Identities = 289/424 (68%), Gaps = 7/424 (2%) Strand=Plus/Plus Query 61080 CGAATTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACA 61139 ||| ||| || || || || |||||| |||| || |||||| |||| || || Sbjct 3198944 CGATTTTACCAGGCCTCTACGTCTGAATTGTACGGTTTAGTTCAGGAAACACCGCAGCGC 3199003 Query 61140 GAAAGGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGG 61199 || | || || |||||||| | ||||| || ||||| || ||||| |||||||| ||| Sbjct 3199004 GAGACAACACCTTTTTATCCGAGAAGCCCATACGGTGTCGCGAAACTCTACGCTTATTGG 3199063 Query 61200 ATTTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAAT 61259 || | || |||||||||||||| || |||| | |||||| ||| |||||| Sbjct 3199064 ATAACTGTTAACTACCGCGAGTCGTACGGGATGTACGCCTGTAACGGTATTCTGTTCAAT 3199123 Query 61260 CACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCA 61319 ||||| || || | | ||| | || |||||||| || || ||| || | || Sbjct 3199124 CACGAAAGCCCTCGTCGGGGTGAGACATTCGTGACTCGCAAGATCACGCGCGCACTCGCC 3199183 Query 61320 AATATTTTTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGAT 61379 ||||| | || | || | ||| ||||||| || ||||| || | ||||| Sbjct 3199184 AATATAGCCCAGGGGCTTGAGGAGTGCTTGTATCTGGGGAACATGGATGCGTTGCGAGAT 3199243 Query 61380 TGGGGATATGCGGAAGATTAT-ATCG-AGGCTATGTGGTTGATGTTGCAACAAGATACTC 61437 ||||| |||| | |||||| ||| | || | ||| ||||| |||| ||||| Sbjct 3199244 TGGGGGCATGCTAAGGATTATGTTCGCATGCAA--TGGATGATGCTGCAGCAAGACGAGG 3199301 Query 61438 CAGATGACTACGTTATTGCGACTGGACAGACGACGA-GTGTCCGTGAATTCGTAAAAAT- 61495 | || |||| ||| ||||||||||| || || | | ||| | |||||||| ||||| Sbjct 3199302 CGGAAGACTTCGTAATTGCGACTGG-CAAACAAATATCTGTGAGAGAATTCGTGAAAATG 3199360 Query 61496 AGCG 61499 |||| Sbjct 3199361 AGCG 3199364 >seq5 Length=3486096 Score = 132 bits (146), Expect = 1e-25 Identities = 279/408 (68%), Gaps = 10/408 (2%) Strand=Plus/Minus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 ||||| || || || || || ||||| |||||| ||||| ||||||| || | || Sbjct 2522136 CAAGCTTCCACCTCAGAGCTTTATGGTTTAGTTCAGGAAATCCCTCAAAGGGAGACCACG 2522077 Query 61149 CCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAAA 61208 |||||||| || | || |||| |||||||| | || || || ||||| | Sbjct 2522076 CCGTTTTACCCAAGGTCGCCTTATGCGGTTGCAAAGATGTATGCCTATTGGATAGCTGTG 2522017 Query 61209 AATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGAGT 61268 ||||| ||||| | ||||| |||| | ||||| |||| || ||||||||| | Sbjct 2522016 AATTATCGCGAAGCTTATGGCATGTACGCTTGTAATGGTATTTTGTTTAATCACGAG--T 2521959 Query 61269 CCCAA--TAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATTT 61326 ||| | | | || | ||||| |||||||||||||| || | ||||||||| Sbjct 2521958 CCCCACGTCGCGGAGAAACTTTTGTCACTCGTAAAATTACCCGTGCCATAGCAAATATTG 2521899 Query 61327 TTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGAT 61386 | | ||| |||| ||| | ||||| ||||| || ||| | ||||||||||| Sbjct 2521898 CTCAAGGTATCGAGCCTTGCCTTTATCTCGGAAATATGGACGCGCTCAGAGATTGGGGGC 2521839 Query 61387 ATGCGGAAGATTATAT-CG-AGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGATGA 61444 | || |||||||| | || | || |||| |||||||||| || |||| || || || Sbjct 2521838 ACGCAAAAGATTATGTGCGCATGC--AGTGGATGATGTTGCAGCAGGATAGCCCTGAAGA 2521781 Query 61445 CTACGTTATTGCGACTGGACAGACGACGA-GTGTCCGTGAATTCGTAA 61491 | |||||||| || || || || | | ||| || ||||| |||| Sbjct 2521780 TTTTGTTATTGCCAC-GGGCAAACAAATATCTGTTCGCGAATTTGTAA 2521734 >seq1 Length=7344524 Score = 125 bits (138), Expect = 2e-23 Identities = 317/478 (66%), Gaps = 17/478 (4%) Strand=Plus/Plus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGT 230229 || || || ||||| ||| |||||| | || || ||||| | ||||| || Sbjct 2683902 TCCTTCGCTGAGCGCCTCATCGCCTTTGCAGCAGTGGAGGGTATCTTCTTTTCTGGTTCG 2683961 Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 ||||| | ||||| ||| || ||| ||| ||||||| || || | | ||||| Sbjct 2683962 TTCTGTTCGATCTTCTGGTTGAAGAAGCGTGGTTTGATGCCGGGTCTGAGCTTCTCTAAT 2684021 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAG 230349 ||||| ||||| || || |||||| | || | || | | | |||| ||| | Sbjct 2684022 GAGTTGATCAGCCGTGATGAGGGTATGCACTGTGACTTTGCCTGTTTGCTGTA--CAATG 2684079 Query 230350 CTC----CAGA-ACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTG 230404 || || ||||||||||| || ||||| | | || ||| | | || || | Sbjct 2684080 ATCACATCATCCACAAGCTACCAAAAGATACGGTGAGAGGTATTATTGCCAATGCCGTAG 2684139 Query 230405 AAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTC-----GCCTTATTGGCATGAA 230459 ||| |||||||| |||||| ||| || || | | | || ||||| ||||| Sbjct 2684140 AAATTGAAAAGGA----ATTTGTAACGG-ATGCCCTCCCCGTAGGACTGATTGGTATGAA 2684194 Query 230460 CGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGG 230519 || || || ||| | ||||||||||| || |||||||||||| | | || || || Sbjct 2684195 TGCCGACCTGATGTGCCAGTACATCGAGTTTGTAGCCGACCGCCTGCTGGTAGCGCTGAA 2684254 Query 230520 TTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCA 230579 |||| || | | |||| ||||||| || ||| ||||| || || || | | Sbjct 2684255 GCACGATAAGATCTTCAACGTAGAGAACCCATTCCCATGGATGGACCTGATCTCTTTGGA 2684314 Query 230580 AGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||| || |||||||||||||||||||| || | ||||| |||| | |||||| ||| Sbjct 2684315 AGGTAAAACCAACTTCTTCGAAAAGCGCGTGGGCGACTACCAGAAGAGTGGTGTAATG 2684372 >seq115 Length=378902 Score = 93.3 bits (102), Expect = 9e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||| | || ||| | ||||||||||||||| |||||||| | Sbjct 238924 CTGATCGGCATGAACAGCGCGCTGATGCGGCAGTACATCGAATTCTGCGCCGACCGGCTG 238983 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | | | || || | ||||| ||||||||| ||||||||| | | |||||| Sbjct 238984 CTGATGGAGCTCGGCTGTGAGAAGAAGTACAACTCGGCGAACCCCTTCGACTGGATGGAG 239043 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 | || ||||| ||||| ||||||||||||||||| || || || Sbjct 239044 ATGATCTCGCTCCAAGGCAAGACCAACTTCTTCGAGAAACGGGT 239087 >seq2 Length=6328565 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 61353 CTAGGAAACATAGACTCTAAAAGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATG 61412 || |||||| | || | ||| | ||||||||| |||| |||||||| | || || ||| Sbjct 820879 CTCGGAAACCTCGATGCGAAACGCGATTGGGGACATGCTCAAGATTATGTTGAAGCCATG 820938 Query 61413 TGGTTGATGTTGCAACAAGATACTCCAGATGACTACGTTATTGCGACTGG 61462 ||| | ||||| || ||||| ||||| ||||||||||| | || ||||| Sbjct 820939 TGGCTCATGTTACAGCAAGAAACTCCGGATGACTACGTCGTAGCAACTGG 820988 >seq385 Length=93797 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||||||||||| |||| || ||||||||||||| Sbjct 40415 TAGCTCAGTCGGTAGAGCGCAAGACTTTTAATCTTGTGGCCGAGGGTTCGAGCCCC 40360 >seq112 Length=381476 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 139062 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 139007 >seq91 Length=448529 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 419722 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 419777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057814078933160