Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_000866.4 Length=168903 Score E Sequences producing significant alignments: (Bits) Value seq493 105 7e-18 >seq493 Length=52014 Score = 105 bits (116), Expect = 7e-18 Identities = 193/281 (69%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 158987 GGTGCTCCGATTCCTTGGCCGAGTGATTCAGTTCCTGCTGGATTTGCTTTGATGGAAGGT 159046 ||||| ||||| || ||||| ||| ||||| |||| | | ||||| | || Sbjct 32841 GGTGCGCCGATCCCGTGGCCATCAGATATCGTTCCGTCTGGCTACGTCCTGATGCAGGGG 32900 Query 159047 CAGACCTTTGATAAGTCCGCATATCCAAAGTTAGCTGTTGCATATCCTAGCGGTGTTATT 159106 ||| | ||||| || || || || ||||| | ||||| || ||||| ||||| || Sbjct 32901 CAGGCGTTTGACAAATCAGCCTACCCAAAACTTGCTGTCGCGTATCCATCGGGTGTGCTT 32960 Query 159107 CCAGATATGCGCGGGCAAACTATCAAGGGTAAACCA---AGTGGTCGTGCTGTTTTGAGC 159163 || |||||||| || || |||||||| ||||| || ||||||||||| ||| Sbjct 32961 CCTGATATGCGAGGCTGGACAATCAAGGGGAAACCCGCCAGCGGTCGTGCTGTATTGT-- 33018 Query 159164 GCTGAGGCA---GATGGTGTTAAGGCTCATAGCCATAGTGCATCGGCTTCAAGTACTGAC 159220 || ||| | ||||| ||||| | || | ||| ||||| || || |||| || Sbjct 33019 -CTCAGGAACAGGATGGAATTAAGTCGCACACCCACAGTGCCAGTGCATCCGGTACGGAT 33077 Query 159221 TTAGGTACTAAAACCACATCAAGCTTTGACTATGGTACGAA 159261 || || || ||||||||||| ||||| || || ||||| Sbjct 33078 TTGGGGACGAAAACCACATCGTCGTTTGATTACGGGACGAA 33118 Score = 105 bits (116), Expect = 7e-18 Identities = 193/281 (69%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 158987 GGTGCTCCGATTCCTTGGCCGAGTGATTCAGTTCCTGCTGGATTTGCTTTGATGGAAGGT 159046 ||||| ||||| || ||||| ||| ||||| |||| | | ||||| | || Sbjct 36975 GGTGCGCCGATCCCGTGGCCATCAGATATCGTTCCGTCTGGCTACGTCCTGATGCAGGGG 37034 Query 159047 CAGACCTTTGATAAGTCCGCATATCCAAAGTTAGCTGTTGCATATCCTAGCGGTGTTATT 159106 ||| | ||||| || || || || ||||| | ||||| || ||||| ||||| || Sbjct 37035 CAGGCGTTTGACAAATCAGCCTACCCAAAACTTGCTGTCGCGTATCCATCGGGTGTGCTT 37094 Query 159107 CCAGATATGCGCGGGCAAACTATCAAGGGTAAACCA---AGTGGTCGTGCTGTTTTGAGC 159163 || |||||||| || || |||||||| ||||| || ||||||||||| ||| Sbjct 37095 CCTGATATGCGAGGCTGGACAATCAAGGGGAAACCCGCCAGCGGTCGTGCTGTATTGT-- 37152 Query 159164 GCTGAGGCA---GATGGTGTTAAGGCTCATAGCCATAGTGCATCGGCTTCAAGTACTGAC 159220 || ||| | ||||| ||||| | || | ||| ||||| || || |||| || Sbjct 37153 -CTCAGGAACAGGATGGAATTAAGTCGCACACCCACAGTGCCAGTGCATCCGGTACGGAT 37211 Query 159221 TTAGGTACTAAAACCACATCAAGCTTTGACTATGGTACGAA 159261 || || || ||||||||||| ||||| || || ||||| Sbjct 37212 TTGGGGACGAAAACCACATCGTCGTTTGATTACGGGACGAA 37252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540356655691360