Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_000902.1 Length=60942 Score E Sequences producing significant alignments: (Bits) Value seq493 1498 0.0 >seq493 Length=52014 Score = 1498 bits (1660), Expect = 0.0 Identities = 886/922 (96%), Gaps = 1/922 (0%) Strand=Plus/Plus Query 4827 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 4886 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 51093 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 51152 Query 4887 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 4946 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 51153 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 51212 Query 4947 GGCCAGGCGTCTTCGCTCATCTATGGGATCGCCACACTCACAACAATGAGTGGCAGATAT 5006 | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 51213 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 51272 Query 5007 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCAATTTC 5066 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 51273 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 51332 Query 5067 TGATGCTGAATCAATGAGGTCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACG 5126 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 51333 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACG 51392 Query 5127 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 5186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51393 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 51452 Query 5187 CATGTTCACCGTTCCTTAAAGACGCCGTTTAACATGCCGATCGCCAGACTTAAATGAGTC 5246 |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 51453 CATGTTCATCGTTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATGAGTC 51512 Query 5247 GGTGTGAATCCCATTAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 5306 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51513 GGTGTGAATCCCATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 51572 Query 5307 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGC-TTTTTTGATTTCAGAATTAGCCTG 5365 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 51573 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGCTTTTTTTGATTTCAGAATTAGCCTG 51632 Query 5366 ACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 5425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51633 ACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 51692 Query 5426 GCAAGCATAAGCACACAGAATATGAAGCCTGCTGCCAGAAAAATGCATTCTGTTGTTGTC 5485 ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 51693 GCAAGCATAAGCACACAGAATATGAAGCCCGCTGCCAGAAAAATGCATTCCGTGGTTGTC 51752 Query 5486 ATGCCGGGTCTCTCTCGTTTGCTTCTGCTTTCGCCGCCATCATTTCCAGCTTTTGTGAAA 5545 || || ||| |||||| | |||||||||||||||| |||||||||||||||||||||||| Sbjct 51753 ATACCTGGTTTCTCTCATCTGCTTCTGCTTTCGCCACCATCATTTCCAGCTTTTGTGAAA 51812 Query 5546 GGGATGTGGCTAACGTATGAAATTCTTCGTCTGTTTCTACTGGTATTGGCACAAACCTGA 5605 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51813 GGGATGCGGCTAACGTATGAAATTCTTCGTCTGTTTCTACTGGTATTGGCACAAACCTGA 51872 Query 5606 CTCCAATTTGAGCGAGGCTATGTGCCATCTCGATACTCGTTCTTAACTCAACGGGAGATG 5665 |||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 51873 TTCCAATTTGAGCAAGGCTATGTGCCATCTCGATACTCGTTCTTAACTCAACAGAAGATG 51932 Query 5666 CTTTGTGCATACAGCTCCCCGTTTATTATTTATCTCCTCAGCCAGCCGCTGTGCTTTCAG 5725 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 51933 CTTTGTGCATACAGCCCCTCGTTTATTATTTATCTCCTCAGCCAGCCGCTGTGCTTTCAG 51992 Query 5726 GGGATTTCTGATAACAGAAAGG 5747 ||||||| ||||||||||||| Sbjct 51993 TGGATTTCGGATAACAGAAAGG 52014 Score = 176 bits (194), Expect = 2e-39 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 4519 TGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 4578 ||||| |||||||||||||||||| ||||| || || |||||||| |||||||||||||| Sbjct 48137 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 48196 Query 4579 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 4635 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 48197 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 48253 Score = 176 bits (194), Expect = 2e-39 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 4519 TGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 4578 ||||| |||||||||||||||||| ||||| || || |||||||| |||||||||||||| Sbjct 50917 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 50976 Query 4579 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 4635 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 50977 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 51033 Score = 167 bits (184), Expect = 9e-37 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 58885 TGCTGCTCCCAGCTCAACTCTCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 58944 ||||| | | |||||||| | ||| ||||| || || |||||||| |||||||||||||| Sbjct 48137 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 48196 Query 58945 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 59001 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48197 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 48253 Score = 167 bits (184), Expect = 9e-37 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 58885 TGCTGCTCCCAGCTCAACTCTCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 58944 ||||| | | |||||||| | ||| ||||| || || |||||||| |||||||||||||| Sbjct 50917 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 50976 Query 58945 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 59001 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50977 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 51033 Score = 138 bits (152), Expect = 4e-28 Identities = 175/238 (74%), Gaps = 17/238 (7%) Strand=Plus/Plus Query 59508 TCACTTCACACCTCTCTGTTTGTTGATAAGTTCAATATCCTGCTGGCAACTGGCGCAAGC 59567 ||||||| |||||||||||| |||||||||| | ||||| ||||||||| || |||| Sbjct 51138 TCACTTCGAACCTCTCTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGT 51197 Query 59568 TCTGCATCCACGAACAGCCAGGCGTCGCCGCTCATCTATCGGATCGCCACACTCGCAACA 59627 | || || |||| ||||||||| || ||||||||||||||||||||||| ||||| Sbjct 51198 CCGACAACCCTGAACGACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACA 51257 Query 59628 ATGAGTAGCAGATGGGGCAT-----TACTATCGG---ATTTGTATTTTTGCAGGGAGAGA 59679 |||||| |||||| || | | | ||| |||| || |||| | | Sbjct 51258 ATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATTT---TTATTGCTGTG----- 51309 Query 59680 TTGCGCTGCAATTCTTCGATTTCAGCGGCGTTGTCGATGATATCTGCCAT-TTTCCTT 59736 |||||||| |||||||| ||||| | || || ||||| |||||||| |||| || Sbjct 51310 TTGCGCTGTAATTCTTCTATTTCTGATGCTGAATCAATGATGTCTGCCATCTTTCATT 51367 Score = 122 bits (134), Expect = 3e-23 Identities = 67/67 (100%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 1696 AAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 1755 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47069 AAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 47128 Query 1756 TACGTCT 1762 ||||||| Sbjct 47129 TACGTCT 47135 Score = 122 bits (134), Expect = 3e-23 Identities = 67/67 (100%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 1696 AAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 1755 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49849 AAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 49908 Query 1756 TACGTCT 1762 ||||||| Sbjct 49909 TACGTCT 49915 Score = 120 bits (132), Expect = 1e-22 Identities = 71/74 (96%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2063 ATCATCTCCATAAAACAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAAT 2122 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| | Sbjct 47254 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAATCCCCGCGAGT 47313 Query 2123 GCGAGGATTGTTAT 2136 |||||||||||||| Sbjct 47314 GCGAGGATTGTTAT 47327 Score = 120 bits (132), Expect = 1e-22 Identities = 71/74 (96%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2063 ATCATCTCCATAAAACAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAAT 2122 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| | Sbjct 50034 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAATCCCCGCGAGT 50093 Query 2123 GCGAGGATTGTTAT 2136 |||||||||||||| Sbjct 50094 GCGAGGATTGTTAT 50107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194891105894336