Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_000924.1 Length=61670 Score E Sequences producing significant alignments: (Bits) Value seq493 1507 0.0 >seq493 Length=52014 Score = 1507 bits (1670), Expect = 0.0 Identities = 888/922 (96%), Gaps = 1/922 (0%) Strand=Plus/Plus Query 4828 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 4887 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 51093 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 51152 Query 4888 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 4947 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 51153 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 51212 Query 4948 GGCCAGGCGTCTTCGCTCATCTATGGGATCGCCACACTCACAACAATGAGTGGCAGATAT 5007 | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 51213 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 51272 Query 5008 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCAATTTC 5067 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 51273 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 51332 Query 5068 TGATGCTGAATCAATGAGGTCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACG 5127 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 51333 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACG 51392 Query 5128 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 5187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51393 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 51452 Query 5188 CATGTTCACCGTTCCTTAAAGACGCCGTTTAACATGCCGATCGCCAGACTTAAATGAGTC 5247 |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 51453 CATGTTCATCGTTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATGAGTC 51512 Query 5248 GGTGTGAATCCCATTAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 5307 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51513 GGTGTGAATCCCATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 51572 Query 5308 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGC-TTTTTTGATTTCAGAATTAGCCTG 5366 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 51573 TCATCGACGTTTTTATCCGGAAACTGCTGTCTGGCTTTTTTTGATTTCAGAATTAGCCTG 51632 Query 5367 ACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 5426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51633 ACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTGAGGTGTCATTGAACAAGTCCCATGTCG 51692 Query 5427 GCAAGCATAAGCACACAGAATATGAAGCCTGCTGCCAGAAAAATGCATTCTGTTGTTGTC 5486 ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 51693 GCAAGCATAAGCACACAGAATATGAAGCCCGCTGCCAGAAAAATGCATTCCGTGGTTGTC 51752 Query 5487 ATGCCGGGTCTCTCTCGTTTGCTTCTGCTTTCGCCGCCATCATTTCCAGCTTTTGTGAAA 5546 || || ||| |||||| | |||||||||||||||| |||||||||||||||||||||||| Sbjct 51753 ATACCTGGTTTCTCTCATCTGCTTCTGCTTTCGCCACCATCATTTCCAGCTTTTGTGAAA 51812 Query 5547 GGGATGTGGCTAACGTATGAAATTCTTCGTCTGTTTCTACTGGTATTGGCACAAACCTGA 5606 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51813 GGGATGCGGCTAACGTATGAAATTCTTCGTCTGTTTCTACTGGTATTGGCACAAACCTGA 51872 Query 5607 CTCCAATTTGAGCGAGGCTATGTGCCATCCCGATACTCGTTCTTAATTCAACAGGAGATG 5666 |||||||||||| ||||||||||||||| |||||||||||||||| ||||||| ||||| Sbjct 51873 TTCCAATTTGAGCAAGGCTATGTGCCATCTCGATACTCGTTCTTAACTCAACAGAAGATG 51932 Query 5667 CTTTGTGCATACAGCCCCTCGTTTATTATTTATCTCTTCAGCCAGCCGCTGTGCTTTCAG 5726 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 51933 CTTTGTGCATACAGCCCCTCGTTTATTATTTATCTCCTCAGCCAGCCGCTGTGCTTTCAG 51992 Query 5727 TGGATTTCGGATAACAGAAAGG 5748 |||||||||||||||||||||| Sbjct 51993 TGGATTTCGGATAACAGAAAGG 52014 Score = 269 bits (298), Expect = 1e-67 Identities = 231/283 (82%), Gaps = 17/283 (6%) Strand=Plus/Plus Query 60152 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 60211 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 51093 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 51152 Query 60212 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 60271 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 51153 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 51212 Query 60272 GGCCAGGCGTCTTCGCTCATCTATGGGATCGCCACACTCGCAACAATGAGTAGCAGATGG 60331 | ||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||| Sbjct 51213 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 51272 Query 60332 GGCAT-----TACTATCGG---ATTTGTATTTTTGCAGGGAGAGATTGCGCTGCAATTCT 60383 || | | | ||| |||| || |||| | | |||||||| |||||| Sbjct 51273 AGCCTGGTGGTTCAGGCGGCGCATTT---TTATTGCTGTG-----TTGCGCTGTAATTCT 51324 Query 60384 TCGATTTCAGCGGCGTTGTCGATGATATCTGCCAT-TTTCCTT 60425 || ||||| | || || ||||| |||||||| |||| || Sbjct 51325 TCTATTTCTGATGCTGAATCAATGATGTCTGCCATCTTTCATT 51367 Score = 176 bits (194), Expect = 2e-39 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 4520 TGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 4579 ||||| |||||||||||||||||| ||||| || || |||||||| |||||||||||||| Sbjct 48137 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 48196 Query 4580 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 4636 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 48197 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 48253 Score = 176 bits (194), Expect = 2e-39 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 4520 TGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 4579 ||||| |||||||||||||||||| ||||| || || |||||||| |||||||||||||| Sbjct 50917 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 50976 Query 4580 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 4636 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 50977 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 51033 Score = 152 bits (168), Expect = 2e-32 Identities = 104/117 (89%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 59844 TGCTGCTCCCAGCTCCACTCTCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 59903 ||||| | | ||||| || | ||| ||||| || || |||||||| |||||||||||||| Sbjct 48137 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 48196 Query 59904 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 59960 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 48197 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 48253 Score = 152 bits (168), Expect = 2e-32 Identities = 104/117 (89%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 59844 TGCTGCTCCCAGCTCCACTCTCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 59903 ||||| | | ||||| || | ||| ||||| || || |||||||| |||||||||||||| Sbjct 50917 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 50976 Query 59904 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 59960 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 50977 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 51033 Score = 125 bits (138), Expect = 3e-24 Identities = 72/74 (97%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2063 ATCATCTCCATAAAACAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGT 2122 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 47254 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAATCCCCGCGAGT 47313 Query 2123 GCGAGGATTGTTAT 2136 |||||||||||||| Sbjct 47314 GCGAGGATTGTTAT 47327 Score = 125 bits (138), Expect = 3e-24 Identities = 72/74 (97%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2063 ATCATCTCCATAAAACAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGT 2122 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 50034 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAATAAATCCCCGCGAGT 50093 Query 2123 GCGAGGATTGTTAT 2136 |||||||||||||| Sbjct 50094 GCGAGGATTGTTAT 50107 Score = 122 bits (134), Expect = 3e-23 Identities = 67/67 (100%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 1696 AAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 1755 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47069 AAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 47128 Query 1756 TACGTCT 1762 ||||||| Sbjct 47129 TACGTCT 47135 Score = 122 bits (134), Expect = 3e-23 Identities = 67/67 (100%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 1696 AAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 1755 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49849 AAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 49908 Query 1756 TACGTCT 1762 ||||||| Sbjct 49909 TACGTCT 49915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197220685644288