Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1 187 3e-42 >seq1 Length=7344524 Score = 187 bits (206), Expect = 3e-42 Identities = 500/751 (67%), Gaps = 20/751 (3%) Strand=Plus/Minus Query 16668 CCATTCTT-TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGAT 16726 ||| |||| ||||| |||| ||||| |||||||| ||||| ||||| || || | ||| Sbjct 2684365 CCACTCTTCTGGTAGTCGCCCACGCGCTTTTCGAAGAAGTTGGTTTTACCTTCCAAAGAG 2684306 Query 16727 ATATTCTCCATGAAATCAAAAGGATTAG-TA-GCTGAAAATATTTTAGAGTACCCCAGTT 16784 || ||||| | || || || || | |||| || || | | | | ||| Sbjct 2684305 ATCAGGTCCATCCATGGGAATGGGTTCTCTACGTTGAAGATCTTATCGTG--CTTCAGCG 2684248 Query 16785 CGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTC 16844 | | | | | || |||||||| || || || |||||||| | ||| ||||| | Sbjct 2684247 CTACCAGCAGGCGGTCGGCTACAAACTCGATGTACTGGCACATCAGGTCGGCATTCATAC 2684188 Query 16845 CTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCT 16904 | || || | ||| || || || ||||| | |||| | || || | || || | Sbjct 2684187 CAATCAGTCCTACGGGGAGGGCATCCGTTACAAATTCCTTTTCAATTTCTACGGCATTGG 2684128 Query 16905 TAATAATAC-TAGCAACTCGTTCCTCGGACG---GTGTATGTTTAAGATGTTTAAACATC 16960 |||||||| | || | | | || | ||| ||| | ||| || ||| | Sbjct 2684127 CAATAATACCTCTCACCGTATCTTTTGGTAGCTTGTGGATGATGT-GATCATTGTACAGC 2684069 Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 | ||| || || || || || | ||||| || | |||||| | || ||||| || || Sbjct 2684068 AAACAGGCAAAGTCACAGTGCATACCCTCATCACGGCTGATCAACTCATTAGAGAAGCTC 2684009 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | || |||||| || || ||||| ||||| || |||| |||||| ||||||||| Sbjct 2684008 AGACCCGGCATCAAACCACGCTTCTTCAACCAGAAGATCGAACAGAACGAACCAGAAAAG 2683949 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || |||||||| || | |||||| ||||| | || || ||| | | | || Sbjct 2683948 AAGATACCCTCCACTGCTGCAAAGGCGATGAGGCGCTCAGCGAAGGAACC------ATTC 2683895 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 |||||| | ||||||| ||||||| ||||| ||| |||| || || ||||| Sbjct 2683894 TCAATCCAACGCAAGGCCCACTCCGCTTTTTTCTTTACGCAGTCCAGGGTCTCGATGGCG 2683835 Query 17201 TTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTAC 17260 || || | | |||||||||| | ||| | ||||| || |||||||| ||| ||| Sbjct 2683834 TTGAACAGGTAGTCTTTTTCCTTTGTGTCTTTAATATAGGTGTCGATGAGCAGGGAGTAA 2683775 Query 17261 ATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCT 17320 | || ||||| || |||||||| |||||||| ||||| ||| || ||| |||| | Sbjct 2683774 GTCTCCGAGTGGATATTCTCCATCATGATCTGAAAGCCGTAGAAGAATTTGGCCTCCG-T 2683716 Query 17321 AT-TTGAACTTCCACGTAGAATCGT-TCCGCTAGATTTTCGTTCACGATGCCGTCGCTCG 17378 || || || || | || || | ||||| || || ||||| ||||| ||||| | Sbjct 2683715 ATACTGTACCTCGGC-TACAAAGTTCTCCGCCAGGTTCTCGTTTACGATCCCGTCAGAGG 2683657 Query 17379 CGGCGAAAAACGCCAATATATGCTTAATGAA 17409 | || ||||| |||| || ||| || ||||| Sbjct 2683656 CCGCAAAAAAGGCCAGTACATGTTTTATGAA 2683626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517540864457760