Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1 165 8e-36 >seq1 Length=7344524 Score = 165 bits (182), Expect = 8e-36 Identities = 493/750 (66%), Gaps = 18/750 (2%) Strand=Plus/Minus Query 15906 CCATTCTT-TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGAT 15964 ||| |||| ||||| || | ||||| |||||||||||||| ||||| || || ||||| Sbjct 2684365 CCACTCTTCTGGTAGTCGCCCACGCGCTTTTCGAAGAAGTTGGTTTTACCTTCCAAAGAG 2684306 Query 15965 ATATTTTCCATAAAATCAAAGGGATTAG-TA-GCTGAAAATATCTTAGAGTACCCCAGTT 16022 || ||||| | || || || || | |||| || |||| || | ||| Sbjct 2684305 ATCAGGTCCATCCATGGGAATGGGTTCTCTACGTTGAAGAT--CTTATCGTGCTTCAGCG 2684248 Query 16023 CCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTC 16082 | | | | || |||||||| || || || || ||||| | |||| ||| || | Sbjct 2684247 CTACCAGCAGGCGGTCGGCTACAAACTCGATGTACTGGCACATCAGGTCGGCATTCATAC 2684188 Query 16083 CTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTT 16142 | || |||| ||| || || || | |||| ||||| | ||| || | || || | Sbjct 2684187 CAATCAGTCCTACGGGGAGGGCATCCGTTACAAATTCCTTTTCAATTTCTACGGCATTGG 2684128 Query 16143 TAATGATATCGGTGGCTCGTGT-TTCAGACGGTGTATGGTTTAGGTGTTTAA---ACATT 16198 ||| ||| | | | ||| | || | | | ||| | | ||| | | ||| Sbjct 2684127 CAATAATACCTCTCAC-CGTATCTTTTGGTAGCTTGTGGATGATGTGATCATTGTACAGC 2684069 Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 | ||| || ||||| || || | || || || | |||||| | || || || || | Sbjct 2684068 AAACAGGCAAAGTCACAGTGCATACCCTCATCACGGCTGATCAACTCATTAGAGAAGCTC 2684009 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| || || ||||| |||||||| |||| | || || || |||||| Sbjct 2684008 AGACCCGGCATCAAACCACGCTTCTTCAACCAGAAGATCGAACAGAACGAACCAGAAAAG 2683949 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || |||||||| || | |||||| ||||| | || || ||| | | | ||| | | Sbjct 2683948 AAGATACCCTCCACTGCTGCAAAGGCGATGAGGCGCTCAGCGAAGGAACCATTCTCA--- 2683892 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 ||||| | |||| || ||||||| |||| || |||| || || ||||| Sbjct 2683891 ---ATCCAACGCAAGGCCCACTCCGCTTTTTTCTTTACGCAGTCCAGGGTCTCGATGGCG 2683835 Query 16439 TTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 || |||| | |||||||||| | || | ||||| || || || || | ||| Sbjct 2683834 TTGAACAGGTAGTCTTTTTCCTTTGTGTCTTTAATATAGGTGTCGATGAGCAGGGAGTAA 2683775 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCT 16558 | || ||||| || ||||| || |||||||| || |||||| || ||||||| | Sbjct 2683774 GTCTCCGAGTGGATATTCTCCATCATGATCTGAAAGCCGTAGAAGAATTTGGCCTCCG-T 2683716 Query 16559 ATT-TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 || ||||| || | ||| |||||||||||||| || ||||| |||||| || Sbjct 2683715 ATACTGTACCTCGGCTACAAAGTTCTCCGCCAGGTTCTCGTTTACGATCCCGTCAGAGGC 2683656 Query 16618 AGCAAAAAACGCCAATATGTGCTTAATGAA 16647 |||||||| |||| || || || ||||| Sbjct 2683655 CGCAAAAAAGGCCAGTACATGTTTTATGAA 2683626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511409720558240