Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 168 8e-37 >seq1 Length=7344524 Score = 168 bits (186), Expect = 8e-37 Identities = 417/626 (67%), Gaps = 14/626 (2%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| |||||| || || || ||||| | |||||| || | || || || || || || | Sbjct 2684073 ACAGCAAACAGGCAAAGTCACAGTGCATACCCTCATCACGGCTGATCAACTCATTAGAGA 2684014 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | | || || ||||| | |||||||| || | ||| || || || || || |||| Sbjct 2684013 AGCTCAGACCCGGCATCAAACCACGCTTCTTCAACCAGAAGATCGAACAGAACGAACCAG 2683954 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGT 24306 ||||||| || || || ||||| |||||||| || || | || | | | | | Sbjct 2683953 AAAAGAAGATACCCTCCACTGCTGCAAAGGCGATGAGGCGCTCAGCGAAGGAACCATTCT 2683894 Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 || ||||| ||||| || || || || ||||| || || ||||| || | Sbjct 2683893 CA---ATCCAACGCAAGGCCCACTCCGCTTTTTTCTTTACGCAGTCCAGGGTCTCGATGG 2683837 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | || || || |||| |||||| || | ||||||| ||| || || || | || | Sbjct 2683836 CGTTGAACAGGTAGTCTTTTTCCTTTGTGTCTTTAATATAGGTGTCGATGAGCAGGGAGT 2683777 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 | | ||||| || || || || || || ||||| |||||||| || | ||||| | Sbjct 2683776 AAGTCTCCGAGTGGATATTCTCCATCATGATCTGAAAGCCGTAGAAGAATTTGGCCTCCG 2683717 Query 24487 TAATCTGTACTTCTA-TACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCGTCAC 24543 || |||||| || |||||| ||||| || | || || || || || |||||| Sbjct 2683716 TATACTGTACCTCGGCTACAAA---GTTCTCCGCCAGGTTCTCGTTTACGATCCCGTCAG 2683660 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTT-- 24600 ||| |||||||| |||| |||||||||||| || | || || | || |||||| Sbjct 2683659 AGGCCGCAAAAAAGGCCAGTACATGTTTTATGAAGTGACGCTCATCGTCGT-TTAGTTTG 2683601 Query 24601 -TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 24659 |||||||||| | | |||| | || | || ||| | ||||| || | || Sbjct 2683600 CTATTCCAATCGGTCAGGTCTTGGCTCAGGTCAATCTCCTCCGCAGTCCAGAAACAGGCT 2683541 Query 24660 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 24719 || | ||| ||||| ||||||||||| || || || || || | |||||||| | Sbjct 2683540 TCCGACTTCTTATATTCGGCCCAGATGTCATCATGCTGGATGGGGAAGAGAACAAATCGA 2683481 Query 24720 TTTGGATTTTTTGCAAGGATTGGTTC 24745 || || || | | | | ||| || || Sbjct 2683480 TTCGGGTTGTCTACCAAGATCGGCTC 2683455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593716167447360