Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq198 156 5e-33 seq201 143 3e-29 seq2 138 1e-27 seq4 123 3e-23 seq19 113 5e-20 seq3 82.4 9e-11 >seq198 Length=250510 Score = 156 bits (172), Expect = 5e-33 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 145777 GTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGC 145836 || ||||| | |||| ||| || ||||| |||||||| || ||||||||| | |||| Sbjct 63964 GTGAGCAGCGCGTAGGAGGCGATATTGAAAGGCACCCCGAGACCCATGTCCGCGCTGCGC 64023 Query 145837 TGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAG 145896 ||||||| ||||||||| |||||||| |||||||||| |||||||| | | |||||| Sbjct 64024 TGGTACATCTGGCAGGACAGCTCCCCCTCCGCCACGTAAAACTGGCAGAACATGTGGCAC 64083 Query 145897 GGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTG 145956 || || |||||||| | ||||||| |||||||||||| | ||| |||| |||| | Sbjct 64084 GGGGGGAGGGCCATCTTGCCGAGGTCCGACGGGTTCCAGGCAGAGAGTACGATTCTCCGG 64143 Query 145957 CTCTCGGGGTT 145967 ||| ||||| Sbjct 64144 TCCTCCGGGTT 64154 Score = 104 bits (114), Expect = 3e-17 Identities = 181/263 (69%), Gaps = 3/263 (1%) Strand=Plus/Plus Query 146125 AGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTG 146184 ||||| || | || ||||| |||||||||| | || ||||| | |||| | || Sbjct 65169 AGGAACTCTCTCGATCCGTTCCCGTCCCAGATGTGGATCCCCCTGTCCTTGAGCACGTTT 65228 Query 146185 GAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACC 146244 | || ||| | || | ||||| |||||||| || ||| || | |||||| || Sbjct 65229 GCGTTGGTGCAGCCGGAAACAAACCACAGCAGCTCCTCCGCGACGCCGCGCCAGAACACG 65288 Query 146245 CTCTTGGTGGTCAGCAGGGGGAA---CTGGCCCCGCAGGGAGTACTTGGCCTGGTCCCCG 146301 | ||||||||| ||||| ||||| || ||| |||| | | ||| | ||| Sbjct 65289 CGCTTGGTGGTGAGCAGCGGGAAGAGCTCCTCCCTCAGGCTGAAGCGCATCTGCACGCCG 65348 Query 146302 AAGACGGACAGGGTGCCCACGCCCGTCCTGTCCCCCCTGCGCACCCCGTTCGCCAGGATC 146361 || ||||||||| ||| || || | ||||||||||||||| ||||| ||||||| Sbjct 65349 AACTTGGACAGGGTCCCCGTCCCGGTGCGGTCCCCCCTGCGCACGCCGTTTTCCAGGATG 65408 Query 146362 TCCCTGACGGTGTTGAGGTACTG 146384 ||| || |||||||||||| Sbjct 65409 TCCTGCACCAGGTTGAGGTACTG 65431 >seq201 Length=246981 Score = 143 bits (158), Expect = 3e-29 Identities = 211/295 (72%), Gaps = 3/295 (1%) Strand=Plus/Plus Query 145645 CTGGGAAAGGGCCGGGGGC-TCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAG 145703 ||||| || || ||||| | | || |||||| || |||| |||||| |||||| Sbjct 13718 CTGGGGCAGCGCGTGGGGCGTGCGGGACAGCTGCAGTTTCACCTGCTCCATATGGTTGGA 13777 Query 145704 GTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTG 145763 |||| ||| ||||| || | | || | ||| || ||||||||| || |||| || Sbjct 13778 ATAGATGTGGGCGTCGCCGATGGAATGCACGAAATCGCCGGGCTCGTACCCGGTGACATG 13837 Query 145764 GGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCAT 145823 ||| | |||| ||||| | ||| ||| |||||||||||||| ||||| ||| Sbjct 13838 GGCCAGCATGACCAGAAGCAGCGCGTAAGAGGCGATGTTGAAGGGCACGCCCAGGAACAT 13897 Query 145824 GTCCCCCGAGCGCTGGTACAGCTGGCAGGAG-AGCTCCCCGCCCGCCACGTAGAACTGGC 145882 ||| |||| ||||||||||||| ||||| | |||| |||||||| | | ||| | Sbjct 13898 GTCGGCCGAACGCTGGTACAGCT-GCAGGTGCAGCTTCCCGCCCGAGATCCGCACCTGCC 13956 Query 145883 ACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGC 145937 ||||| ||| ||||| ||||| ||||| || | || |||||||||||||| Sbjct 13957 ACAGGGTGTGACAGGGGGGCAGCGCCATCTCGTCGACCTCGGCCGGGTTCCAGGC 14011 >seq2 Length=6328565 Score = 138 bits (152), Expect = 1e-27 Identities = 174/238 (73%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 145711 TGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACC 145770 |||||||| || | ||||| |||||| || |||| |||||| |||| ||||| ||| Sbjct 4240746 TGCGCGTCACCGAATGTGTGGACGAAGTCGCCTGGCTTGAGGCCGGTGACCTGGGCAACC 4240805 Query 145771 ATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCC 145830 || ||||| || | || || ||||||||||| || || || | ||| | Sbjct 4240806 ATTATGGTCAAAAGCGCATAAGATGCGATGTTGAAGGGAACGCCGAGAAAGACATCCGCG 4240865 Query 145831 GAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGG 145890 ||||||||||| |||||||||||||| | ||| |||| || ||||||||| ||||| | Sbjct 4240866 GAGCGCTGGTAAAGCTGGCAGGAGAGTTTGCCGTCCGCGACATAGAACTGGAACAGGGAG 4240925 Query 145891 TGGCAGGGCGGCAGGGCCAT---GGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGA 145945 ||||| |||||||| ||||| | |||| |||||||||||||| | || || Sbjct 4240926 TGGCACGGCGGCAGCGCCATTTCATCAACCAGG---GCCGGGTTCCAGGCCGAGACGA 4240980 >seq4 Length=3599618 Score = 123 bits (136), Expect = 3e-23 Identities = 224/329 (68%), Gaps = 18/329 (5%) Strand=Plus/Minus Query 145635 GATCCTGAGCCTGGGAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCAC 145694 ||||| |||| ||| | ||| ||||| || ||| ||||| || ||| | |||| Sbjct 202149 GATCCAGAGCTCGGGGAGGGGGCGGGGCTCCCGGGTGAGCTGTAGTTTCGCTTGATCCAG 202090 Query 145695 GTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCC 145754 ||| |||||||||| ||| || || | | ||||| |||||||| ||||||| || Sbjct 202089 GTGATTGAGGTAGAGGTGGAGATCGCCGAAGGTGTGGACGAAGTCCCGGGGCTCGTAACC 202030 Query 145755 CGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCC 145814 || || ||||||| | ||| || || | |||| ||| ||||||||||| || || Sbjct 202029 GCAGATTTGAGCGACCAGATGGGTGAGGAGAGCGTAGGAGGCGATGTTGAAGGGAACGCC 201970 Query 145815 CAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAG--CT-------CCCCG-- 145863 || | || | ||||||||| |||||||||||||| || ||||| Sbjct 201969 TAGAAAAAGATCGGCGCTGCGCTGGTAGAGCTGGCAGGAGAGTCCTGGTTTGCCCCCGTT 201910 Query 145864 -------CCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGG 145916 | |||||||||||| | ||||| ||||| || || |||||||| | || Sbjct 201909 TTGAGCTTCATGGACGTAGAACTGGAAAAGGAGATGGCAAGGGGGGAGGGCCATTTCCGG 201850 Query 145917 CAGGTCCGCCGGGTTCCAGGCGGTGAGGA 145945 || ||| ||| |||||| |||| || || Sbjct 201849 CACGTCGGCCACGTTCCATGCGGAGACGA 201821 >seq19 Length=1029424 Score = 113 bits (124), Expect = 5e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 145762 TGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCC 145821 ||||| | ||||| || ||||| | |||| ||| || ||||| ||||| ||||| | Sbjct 785061 TGGGCAATCATGTGCGTGAGCAGAGCGTAGGAGGCAATATTGAACGGCACGCCCAGGAAC 785120 Query 145822 ATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGG 145881 | ||| | ||||||||| ||||||||||| ||| ||| | ||||||||||||||| Sbjct 785121 AGGTCGGCGCTGCGCTGGTAGAGCTGGCAGGAAAGCCTTCCGTCGGCCACGTAGAACTGG 785180 Query 145882 CACAGGAGGTGGCAGGGCGGCAGGGCCATG 145911 ||||| |||||| |||| ||| |||||| Sbjct 785181 AACAGGCAGTGGCAAGGCGCCAGAGCCATG 785210 >seq3 Length=4400433 Score = 82.4 bits (90), Expect = 9e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 145705 TAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGG 145764 |||| |||||| || || | ||||| || || || |||| ||| || ||| | | Sbjct 1995651 TAGAGGTGCGCATCGCCAAATGTGTGGACAAAATCACCAGGCTTGAGACCAGTGGCGCGC 1995592 Query 145765 GCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATG 145824 || | ||| ||||| || | || || ||||| || ||||| || || || Sbjct 1995591 GCCATCATCATGGTCAAAAGCGCATATGACGCGATGTTAAACGGCACGCCGAGGAAAATA 1995532 Query 145825 TCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCAC 145884 || |||||||||| || ||||||||| || ||| || || | ||| ||| || Sbjct 1995531 TCGGCCGAGCGCTGATAAAGCTGGCAGTTCAGACGCCCATCCATGACATTGAATTGGAAC 1995472 Query 145885 AGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGC 145937 ||| ||| ||||||||||| ||||| | || | || || ||||||||||| Sbjct 1995471 AGGCAGTGACAGGGCGGCAGCGCCATATCAGGGACATCAGCGGGGTTCCAGGC 1995419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590071400797280