Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_001697.1 Length=32355 Score E Sequences producing significant alignments: (Bits) Value seq6 111 3e-20 seq455 95.1 3e-15 seq412 95.1 3e-15 >seq6 Length=3173221 Score = 111 bits (122), Expect = 3e-20 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 355 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 414 ||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||| Sbjct 2388403 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAATTGGTTAAAAGCCAACTGCTCTACC 2388344 Query 415 GACTGAGCTAACGACCCAA 433 |||||||||||||||||| Sbjct 2388343 AACTGAGCTAACGACCCAA 2388325 Score = 107 bits (118), Expect = 4e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 355 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 414 ||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||| Sbjct 2388546 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAATTGGTTAAAAGCCAACTGCTCTACC 2388487 Query 415 GACTGAGCTAACGACCC 431 |||||||||||||||| Sbjct 2388486 AACTGAGCTAACGACCC 2388470 >seq455 Length=62500 Score = 95.1 bits (104), Expect = 3e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 356 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 415 ||||| | |||| ||||||||||||| ||||| || ||||||||||| | ||||||||| Sbjct 19063 TGGTGAGCCGTGCAGGATTCGAACCTGCGACCCACTGATTAAAAGTCAGTTGCTCTACCA 19122 Query 416 ACTGAGCTAACGACCCA 432 |||||||||||| |||| Sbjct 19123 ACTGAGCTAACGGCCCA 19139 >seq412 Length=80000 Score = 95.1 bits (104), Expect = 3e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 356 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 415 ||||| | |||| ||||||||||||| ||||| || ||||||||||| | ||||||||| Sbjct 39570 TGGTGAGCCGTGCAGGATTCGAACCTGCGACCCACTGATTAAAAGTCAGTTGCTCTACCA 39629 Query 416 ACTGAGCTAACGACCCA 432 |||||||||||| |||| Sbjct 39630 ACTGAGCTAACGGCCCA 39646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103413501070328