Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq53 131 1e-25 seq63 113 4e-20 seq36 109 5e-19 >seq53 Length=625924 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| |||||||| ||||| | || | || |||||||| || ||||| ||||| Sbjct 124713 CCCCCGCGCAGCCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 124772 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||||||||| ||||| || | || || | |||||||||| ||| Sbjct 124773 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 124832 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || ||||| | ||| || || ||||||| Sbjct 124833 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACG 124892 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || ||||| || || ||||| Sbjct 124893 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 124939 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| || ||||| | || | || |||||||| || ||||| ||||| Sbjct 125397 CCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 125456 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||||||||| ||||| || | || || | |||||||||| ||| Sbjct 125457 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 125516 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || ||||| | ||| || || ||||||| Sbjct 125517 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACG 125576 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || ||||| || |||||||| Sbjct 125577 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCAT 125623 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| || ||||| | || | || |||||||| || ||||| ||||| Sbjct 124941 CCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 125000 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||||||||| ||||| || | || || | |||||||||| ||| Sbjct 125001 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 125060 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || ||||| | ||| || || ||||||| Sbjct 125061 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACG 125120 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || ||||| || || ||||| Sbjct 125121 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 125167 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| || ||||| | || | || |||||||| || ||||| ||||| Sbjct 125169 CCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 125228 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||||||||| ||||| || | || || | |||||||||| ||| Sbjct 125229 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 125288 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || ||||| | ||| || || ||||||| Sbjct 125289 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACG 125348 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || ||||| || || ||||| Sbjct 125349 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 125395 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| || ||||| ||||| ||||| || ||||||||||||| ||||| || | | Sbjct 126093 CCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 126152 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | || | |||||||||| ||| | ||| |||||||| |||||| || ||||| | Sbjct 126153 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 126212 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 ||| || || ||||||| || | || ||||||||||| || | || || || | Sbjct 126213 CGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTCACGA 126272 Query 21166 ATATTTGC 21173 | || ||| Sbjct 126273 AAATCTGC 126280 >seq63 Length=566113 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || |||||||| ||||| | || | ||| |||||||| || ||||| ||||| | Sbjct 328821 CCACCACGCAGCCTCAGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 328880 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||||||||| || || || | || || | |||||||||| ||| Sbjct 328881 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 328940 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| | ||||| | ||| || || ||| || Sbjct 328941 ATGCCCTCCTTGTCCTGGATCTTCGGCTTCACGCCGTCGATCGTGTCGGAGGGTTCTACG 329000 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||| || || | || ||||| || || ||||| Sbjct 329001 TCAAGCGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCAT 329047 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 ||||||| || || ||||| |||||| || ||||||||||||| || || || | | Sbjct 329441 CCTTTTGGATATTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGA 329500 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | || | |||||||||| ||| | ||| |||||||| |||||| || ||||| | Sbjct 329501 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTATGCTTCACGCCGT 329560 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 ||| || || ||||||| || | ||| | ||||||||| || | || ||||||| Sbjct 329561 CGATCGTGTCCGAGGGCTCCACGTCAAGGGTGACGGTCTTGCCCGTGAGAGTCTTGACAA 329620 Query 21166 ATATTTGC 21173 | || ||| Sbjct 329621 AGATCTGC 329628 >seq36 Length=729648 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| || ||||| ||||| |||||| || ||||||||||||| ||||| ||| | | Sbjct 221028 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 220969 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | || | |||||| || || | ||| |||||||| |||||| || ||||| | Sbjct 220968 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 220909 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 ||| || || ||||||| |||| ||| ||||||||||| || | || ||||| | Sbjct 220908 CGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 220849 Query 21166 ATATTTGCAT 21175 | || ||||| Sbjct 220848 AGATCTGCAT 220839 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| || ||||| ||||| |||||| || ||||||||||||| ||||| ||| | | Sbjct 221520 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 221461 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | || | |||||| || || | ||| |||||||| |||||| || ||||| | Sbjct 221460 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 221401 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 ||| || || ||||||| |||| ||| ||||||||||| || | || ||||| | Sbjct 221400 CGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 221341 Query 21166 ATATTTGCAT 21175 | || ||||| Sbjct 221340 AGATCTGCAT 221331 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || ||||| | || || | || | ||| ||||| || || ||||| ||||| Sbjct 222050 TCCGCCGCGCAGGCGAAGAACAAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAGTCGCT 221991 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 ||| || || ||||||||||||| ||||| || | || || | |||||| || || Sbjct 221990 CAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGCGG 221931 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | || |||||||| |||||| || ||||| | ||| || || ||||||| Sbjct 221930 GATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCAC 221871 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || | || ||||| || || ||||| Sbjct 221870 GTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 221823 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 20983 ACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCAT 21042 || |||| || ||||| ||||| ||| || || ||||||||||||| ||||| ||| Sbjct 220069 ACACCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAA 220010 Query 21043 AAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCT 21102 | || || | |||||||||| ||| | ||| |||||||| ||| ||||| ||||| Sbjct 220009 AGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATTTTTTGCTTCACGC 219950 Query 21103 GGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGA 21162 | ||| || || |||||| || | ||| ||||||||||| || | || |||| Sbjct 219949 CGTCGATCGTGTCCGAGGGCTCGACATCTAGGGTGATGGTCTTGCCCGTGAGAGTCTTGA 219890 Query 21163 CAAATATTTG 21172 | || || || Sbjct 219889 CGAAAATCTG 219880 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| || ||||| ||||| |||||| || ||||||||||||| ||||| || | | Sbjct 220539 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 220480 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | || | |||||| || || | ||| |||||||| |||||| || ||||| | Sbjct 220479 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 220420 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 ||| || || ||||||| |||| ||| ||||||||||| || | || ||||| | Sbjct 220419 CGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 220360 Query 21166 ATATTTGCAT 21175 | || ||||| Sbjct 220359 AGATCTGCAT 220350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422255432920112