Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq493 426 3e-115 >seq493 Length=52014 Score = 426 bits (472), Expect = 3e-115 Identities = 394/498 (79%), Gaps = 1/498 (0%) Strand=Plus/Plus Query 13375 CACAGCGCGAAAAGGCCTTGTCCAGCTTAGTAGCGCCACCAACAGCACGTCTGAAACGCT 13434 |||| || |||| || | || ||||| || || || ||||||||||||||||||||||| Sbjct 32316 CACAACGAGAAAGGGGATAGTGCAGCTCAGCAGTGCAACCAACAGCACGTCTGAAACGCT 32375 Query 13435 CGCCGCAACACCAAAAGCCGTTAAGACGGTAATGGATGAAACGAACAAAAAAGCGCCATT 13494 || ||||| ||||| || |||||| |||||||||||||||||||| |||||| ||| | Sbjct 32376 TGCTGCAACGCCAAAGGCGGTTAAGGTGGTAATGGATGAAACGAACAGAAAAGC-CCACT 32434 Query 13495 AAACAGCCCTGCACTGACCGGAACGCCAACGACGCCAACTGCGCGACAGGGAACGAATAA 13554 |||| || |||||||||||||||||||| | ||||| |||| |||||| || || Sbjct 32435 GGACAGTCCGGCACTGACCGGAACGCCAACAGCACCAACCGCGCTCAGGGGAACAAACAA 32494 Query 13555 TACTCAGATCGCAAACACGGCTTTCGTTATGGCCGCGATTGCCGCCCTTGTAGACTCGTC 13614 ||| ||||| || ||||| ||||| || ||||||||||||| | || | ||| |||| Sbjct 32495 TACCCAGATTGCGAACACCGCTTTTGTACTGGCCGCGATTGCAGATGTTATCGACGCGTC 32554 Query 13615 GCCTGACGCACTGAATACGCTGAACGAGCTGGCGGCGGCGCTGGGCAATGACCCGAATTT 13674 ||||||||||||||||||||||| || ||||| || ||||| || ||||| || |||| Sbjct 32555 ACCTGACGCACTGAATACGCTGAATGAACTGGCCGCAGCGCTCGGGAATGATCCAGATTT 32614 Query 13675 TGCTACCACCATGACTAATGCGCTTGCGGGTAAGCAACCGAAAGATGCTACCCTGACGGC 13734 |||||||||||||||||| |||||||||||||| |||||||| |||| || |||||||| Sbjct 32615 TGCTACCACCATGACTAACGCGCTTGCGGGTAAACAACCGAAGAATGCGACACTGACGGC 32674 Query 13735 GCTGGCGGGGCTTGCTACTGCGGCAGACAGGTTTCCGTATTTTACGGGGAATGATGTTGC 13794 |||||| |||||| | || ||| | | | || ||||||||| ||| ||||||| || Sbjct 32675 GCTGGCAGGGCTTTCCACGGCGAAAAATAAATTACCGTATTTTGCGGAAAATGATGCCGC 32734 Query 13795 CAGCCTGGCGACCCTGACAAAAGTCGGGCGGGATATTCTGGCTAAATCGACCGTTGCCGC 13854 ||||||| | ||||| | || || ||||||||||||| ||| ||||||| | Sbjct 32735 CAGCCTGACTGAACTGACTCAGGTTGGCAGGGATATTCTGGCAAAAAATTCCGTTGCAGA 32794 Query 13855 CGTTATCGAATATCTCGG 13872 ||| | ||||| || || Sbjct 32795 TGTTCTTGAATACCTTGG 32812 Score = 426 bits (472), Expect = 3e-115 Identities = 394/498 (79%), Gaps = 1/498 (0%) Strand=Plus/Plus Query 13375 CACAGCGCGAAAAGGCCTTGTCCAGCTTAGTAGCGCCACCAACAGCACGTCTGAAACGCT 13434 |||| || |||| || | || ||||| || || || ||||||||||||||||||||||| Sbjct 36450 CACAACGAGAAAGGGGATAGTGCAGCTCAGCAGTGCAACCAACAGCACGTCTGAAACGCT 36509 Query 13435 CGCCGCAACACCAAAAGCCGTTAAGACGGTAATGGATGAAACGAACAAAAAAGCGCCATT 13494 || ||||| ||||| || |||||| |||||||||||||||||||| |||||| ||| | Sbjct 36510 TGCTGCAACGCCAAAGGCGGTTAAGGTGGTAATGGATGAAACGAACAGAAAAGC-CCACT 36568 Query 13495 AAACAGCCCTGCACTGACCGGAACGCCAACGACGCCAACTGCGCGACAGGGAACGAATAA 13554 |||| || |||||||||||||||||||| | ||||| |||| |||||| || || Sbjct 36569 GGACAGTCCGGCACTGACCGGAACGCCAACAGCACCAACCGCGCTCAGGGGAACAAACAA 36628 Query 13555 TACTCAGATCGCAAACACGGCTTTCGTTATGGCCGCGATTGCCGCCCTTGTAGACTCGTC 13614 ||| ||||| || ||||| ||||| || ||||||||||||| | || | ||| |||| Sbjct 36629 TACCCAGATTGCGAACACCGCTTTTGTACTGGCCGCGATTGCAGATGTTATCGACGCGTC 36688 Query 13615 GCCTGACGCACTGAATACGCTGAACGAGCTGGCGGCGGCGCTGGGCAATGACCCGAATTT 13674 ||||||||||||||||||||||| || ||||| || ||||| || ||||| || |||| Sbjct 36689 ACCTGACGCACTGAATACGCTGAATGAACTGGCCGCAGCGCTCGGGAATGATCCAGATTT 36748 Query 13675 TGCTACCACCATGACTAATGCGCTTGCGGGTAAGCAACCGAAAGATGCTACCCTGACGGC 13734 |||||||||||||||||| |||||||||||||| |||||||| |||| || |||||||| Sbjct 36749 TGCTACCACCATGACTAACGCGCTTGCGGGTAAACAACCGAAGAATGCGACACTGACGGC 36808 Query 13735 GCTGGCGGGGCTTGCTACTGCGGCAGACAGGTTTCCGTATTTTACGGGGAATGATGTTGC 13794 |||||| |||||| | || ||| | | | || ||||||||| ||| ||||||| || Sbjct 36809 GCTGGCAGGGCTTTCCACGGCGAAAAATAAATTACCGTATTTTGCGGAAAATGATGCCGC 36868 Query 13795 CAGCCTGGCGACCCTGACAAAAGTCGGGCGGGATATTCTGGCTAAATCGACCGTTGCCGC 13854 ||||||| | ||||| | || || ||||||||||||| ||| ||||||| | Sbjct 36869 CAGCCTGACTGAACTGACTCAGGTTGGCAGGGATATTCTGGCAAAAAATTCCGTTGCAGA 36928 Query 13855 CGTTATCGAATATCTCGG 13872 ||| | ||||| || || Sbjct 36929 TGTTCTTGAATACCTTGG 36946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107375066634120