Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq493 2652 0.0 >seq493 Length=52014 Score = 2652 bits (2940), Expect = 0.0 Identities = 1547/1598 (97%), Gaps = 0/1598 (0%) Strand=Plus/Plus Query 21035 TTTTACGACAAAAAATTAGCGCAAGAAGACAAAAATCACCTTGCGCTAATGCTCTGTCTC 21094 ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 45495 TTTGATGACAAAAAATTAGCGCAAGAAGACAAAAATCACCTTGCGCTAATGCTCTGTTAC 45554 Query 21095 AGGTCACTAATACTATCTAAGTAGTTGATTCATAGTGACTGGATATGTTGTGTTTTGTAG 21154 ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| || Sbjct 45555 AGGTCACTAATACCATCTAAGTAGTTGATTCATAGTGACTGCATATGTTGTGTTTTACAG 45614 Query 21155 CATCATGTAGTCTATTTTTTATACTAAAGATATTGTAACACATTGATATTAATGATTTTT 21214 || ||||||||| |||||||| | ||| || | ||| | ||||||||| || ||| Sbjct 45615 TATTATGTAGTCTGTTTTTTATGCAAAATCTAATTTAATATATTGATATTTATATCATTT 45674 Query 21215 AATGTTTCACGTTCAGCTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTATCA 21274 | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 45675 TACGTTTCTCGTTCAGCTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTATCA 45734 Query 21275 ATTTGTTGCAACGAACAGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAATTT 21334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 45735 ATTTGTTGCAACGAACAGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAATTT 45794 Query 21335 TGTCCCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTATGCC 21394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 45795 TGTCCCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTATGCC 45854 Query 21395 CGAGAAGATGTTGAGCAAACTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACAAAC 21454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 45855 CGAGAAGATGTTGAGCAAACTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACAAAC 45914 Query 21455 TGCGCAACTCGTGAAAGGTAGGCGGATCCCCTTCGAAGGAAAGACCTGATGCTTTTCGTG 21514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 45915 TGCGCAACTCGTGAAAGGTAGGCGGATCCCCTTCGAAGGAAAGACCTGATGCTTTTCGTG 45974 Query 21515 CGCGCATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCGCGACGAGTAGATGCAA 21574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 45975 CGCGCATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCGCGACGAGTAGATGCAA 46034 Query 21575 TTATGGTTTCTCCGCCAAGAATCTCTTTGCATTTATCAAGTGTTTCCTTCATTGATATTC 21634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46035 TTATGGTTTCTCCGCCAAGAATCTCTTTGCATTTATCAAGTGTTTCCTTCATTGATATTC 46094 Query 21635 CGAGAGCATCAACATGCAATGCTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTTGCT 21694 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46095 CGAGAGCATCAATATGCAATGCTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTTGCT 46154 Query 21695 CGACATAAAGATATCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAACTC 21754 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46155 CGACATAAAGATATCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAACTC 46214 Query 21755 GTTGCCCGGTAACAACAGCCAGTTCCATTGCAAGTCTGAGCCAACATGGTGATGATTCTG 21814 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46215 GTTGCCCGGTAACAACAGCCAGTTCCATTGCAAGTCTGAGCCAACATGGTGATGATTCTG 46274 Query 21815 CTGCTTGATAAATTTTCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTGATT 21874 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46275 CTGCTTGATAAATTTTCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTGATT 46334 Query 21875 TTGCTGCGCGAGTGGCAGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATTGCCTCTC 21934 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 46335 TTGCTGCGCGAGTGGCAGCGACATGGTTTGTTGTTATATGGCCTTCAGCTATTGCCTCTC 46394 Query 21935 GGAATGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGACGCAGCCTTGCCCTCGTCTA 21994 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 46395 GGAATGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGACGCCGCCTTGCCCTCGTCTA 46454 Query 21995 TGTATCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCATCAG 22054 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46455 TGTATCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCATCAG 46514 Query 22055 GCAGCCCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCTTGA 22114 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46515 GCAGACCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCTTGA 46574 Query 22115 TTCCTCTGCTGGCGAGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACAGAAT 22174 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 46575 TTCCTCTGCTGGCCAGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACGGAAT 46634 Query 22175 TATCACTGTTGATTCTTGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCAATGT 22234 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 46635 TATCACTGTTGATTCTCGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCAATGT 46694 Query 22235 TGGCCTGTATAGCTTCAGTGATTGCTATCCTCCTGTCTCGGCCTAATCCGAACTCTTTAC 22294 ||||||||||||||||||||||||| || | |||||||| ||||||||| |||||||||| Sbjct 46695 TGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCTGCCTAATCCAAACTCTTTAC 46754 Query 22295 CCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGGGTA 22354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46755 CCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGGGTA 46814 Query 22355 AATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTACCT 22414 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 46815 AATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCCACCT 46874 Query 22415 GTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCA 22474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46875 GTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCA 46934 Query 22475 TCCTTAACCGGAGGAGGGAATATCCTGCATTCGCGCACCCATCGACGAACTGTTTCAAGG 22534 |||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| Sbjct 46935 TCCTTAACCGGAGGTGGGAATATCCTGCATTCCCGAACCCATCGACGAACTGTTTCAAGG 46994 Query 22535 CTTCTTGGGCGTCGCTGGCGAGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCT 22594 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 46995 CTTCTTGGACGTCGCTGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCT 47054 Query 22595 CCGCAATTACACGCAAGAAAAAGCCGCATTGATGCGGC 22632 |||||||||||||||||||||| |||| | | ||||| Sbjct 47055 CCGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGC 47092 Score = 2652 bits (2940), Expect = 0.0 Identities = 1547/1598 (97%), Gaps = 0/1598 (0%) Strand=Plus/Plus Query 21035 TTTTACGACAAAAAATTAGCGCAAGAAGACAAAAATCACCTTGCGCTAATGCTCTGTCTC 21094 ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 48275 TTTGATGACAAAAAATTAGCGCAAGAAGACAAAAATCACCTTGCGCTAATGCTCTGTTAC 48334 Query 21095 AGGTCACTAATACTATCTAAGTAGTTGATTCATAGTGACTGGATATGTTGTGTTTTGTAG 21154 ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| || Sbjct 48335 AGGTCACTAATACCATCTAAGTAGTTGATTCATAGTGACTGCATATGTTGTGTTTTACAG 48394 Query 21155 CATCATGTAGTCTATTTTTTATACTAAAGATATTGTAACACATTGATATTAATGATTTTT 21214 || ||||||||| |||||||| | ||| || | ||| | ||||||||| || ||| Sbjct 48395 TATTATGTAGTCTGTTTTTTATGCAAAATCTAATTTAATATATTGATATTTATATCATTT 48454 Query 21215 AATGTTTCACGTTCAGCTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTATCA 21274 | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48455 TACGTTTCTCGTTCAGCTTTTTTATACTAAGTTGGCATTATAAAAAAGCATTGCTTATCA 48514 Query 21275 ATTTGTTGCAACGAACAGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAATTT 21334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48515 ATTTGTTGCAACGAACAGGTCACTATCAGTCAAAATAAAATCATTATTTGATTTCAATTT 48574 Query 21335 TGTCCCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTATGCC 21394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48575 TGTCCCACTCCCTGCCTCTGTCATCACGATACTGTGATGCCATGGTGTCCGACTTATGCC 48634 Query 21395 CGAGAAGATGTTGAGCAAACTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACAAAC 21454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48635 CGAGAAGATGTTGAGCAAACTTATCGCTTATCTGCTTCTCATAGAGTCTTGCAGACAAAC 48694 Query 21455 TGCGCAACTCGTGAAAGGTAGGCGGATCCCCTTCGAAGGAAAGACCTGATGCTTTTCGTG 21514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48695 TGCGCAACTCGTGAAAGGTAGGCGGATCCCCTTCGAAGGAAAGACCTGATGCTTTTCGTG 48754 Query 21515 CGCGCATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCGCGACGAGTAGATGCAA 21574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48755 CGCGCATAAAATACCTTGATACTGTGCCGGATGAAAGCGGTTCGCGACGAGTAGATGCAA 48814 Query 21575 TTATGGTTTCTCCGCCAAGAATCTCTTTGCATTTATCAAGTGTTTCCTTCATTGATATTC 21634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48815 TTATGGTTTCTCCGCCAAGAATCTCTTTGCATTTATCAAGTGTTTCCTTCATTGATATTC 48874 Query 21635 CGAGAGCATCAACATGCAATGCTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTTGCT 21694 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48875 CGAGAGCATCAATATGCAATGCTGTTGGGATGGCAATTTTTACGCCTGTTTTGCTTTGCT 48934 Query 21695 CGACATAAAGATATCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAACTC 21754 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48935 CGACATAAAGATATCCATCTACGATATCAGACCACTTCATTTCGCATAAATCACCAACTC 48994 Query 21755 GTTGCCCGGTAACAACAGCCAGTTCCATTGCAAGTCTGAGCCAACATGGTGATGATTCTG 21814 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48995 GTTGCCCGGTAACAACAGCCAGTTCCATTGCAAGTCTGAGCCAACATGGTGATGATTCTG 49054 Query 21815 CTGCTTGATAAATTTTCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTGATT 21874 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49055 CTGCTTGATAAATTTTCAGGTATTCGTCAGCCGTAAGTCTTGATCTCCTTACCTCTGATT 49114 Query 21875 TTGCTGCGCGAGTGGCAGCGACCGGGTTTGTTGTTATATGGCCTTCAGCTATTGCCTCTC 21934 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 49115 TTGCTGCGCGAGTGGCAGCGACATGGTTTGTTGTTATATGGCCTTCAGCTATTGCCTCTC 49174 Query 21935 GGAATGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGACGCAGCCTTGCCCTCGTCTA 21994 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 49175 GGAATGCATCGCTCAGTGTTGATCTGATTAACTTGGCTGACGCCGCCTTGCCCTCGTCTA 49234 Query 21995 TGTATCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCATCAG 22054 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49235 TGTATCCATTGAGCATTGCCGCAATTTCTTTTGTGGTGATGTCTTCAAGTGGAGCATCAG 49294 Query 22055 GCAGCCCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCTTGA 22114 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49295 GCAGACCCCTCCTTATTGCTTTAATTTTGCTCATGTAATTTATGAGTGTCTTCTGCTTGA 49354 Query 22115 TTCCTCTGCTGGCGAGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACAGAAT 22174 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 49355 TTCCTCTGCTGGCCAGGATTTTTTCGTAGCGATCAAGCCATGAATGTAACGTAACGGAAT 49414 Query 22175 TATCACTGTTGATTCTTGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCAATGT 22234 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 49415 TATCACTGTTGATTCTCGCTGTCAGAGGCTTGTGTTTGTGTCCTGAAAATAACTCAATGT 49474 Query 22235 TGGCCTGTATAGCTTCAGTGATTGCTATCCTCCTGTCTCGGCCTAATCCGAACTCTTTAC 22294 ||||||||||||||||||||||||| || | |||||||| ||||||||| |||||||||| Sbjct 49475 TGGCCTGTATAGCTTCAGTGATTGCGATTCGCCTGTCTCTGCCTAATCCAAACTCTTTAC 49534 Query 22295 CCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGGGTA 22354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49535 CCGTCCTTGGGTCCCTGTAGCAGTAATATCCATTGTTTCTTATATAAAGGTTAGGGGGTA 49594 Query 22355 AATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCTACCT 22414 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 49595 AATCCCGGCGCTCATGACTTCGCCTTCTTCCCATTTCTGATCCTCTTCAAAAGGCCACCT 49654 Query 22415 GTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCA 22474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49655 GTTACTGGTCGATTTAAGTCAACCTTTACCGCTGATTCGTGGAACAGATACTCTCTTCCA 49714 Query 22475 TCCTTAACCGGAGGAGGGAATATCCTGCATTCGCGCACCCATCGACGAACTGTTTCAAGG 22534 |||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| Sbjct 49715 TCCTTAACCGGAGGTGGGAATATCCTGCATTCCCGAACCCATCGACGAACTGTTTCAAGG 49774 Query 22535 CTTCTTGGGCGTCGCTGGCGAGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCT 22594 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 49775 CTTCTTGGACGTCGCTGGCGTGCGTTCCACTCCTGAAGTGTCAAGTACATCGCAAAGTCT 49834 Query 22595 CCGCAATTACACGCAAGAAAAAGCCGCATTGATGCGGC 22632 |||||||||||||||||||||| |||| | | ||||| Sbjct 49835 CCGCAATTACACGCAAGAAAAAACCGCCATCAGGCGGC 49872 Score = 131 bits (144), Expect = 4e-26 Identities = 86/95 (91%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 20946 CCGCAGCCACGTCGTATGCAAGAACGTGCTGCGGTTGGCTGGTGAACTTTCGATAGTGCG 21005 |||||| ||||||||||||| ||||||||||||| |||||||||||||| |||||||||| Sbjct 39892 CCGCAGACACGTCGTATGCAGGAACGTGCTGCGGCTGGCTGGTGAACTTCCGATAGTGCG 39951 Query 21006 AGTATTGAATGATTTCCAGCCGTTACCGATTTTAC 21040 || ||||||||||||||| | |||||||||||| Sbjct 39952 GGTGTTGAATGATTTCCAGTTGCTACCGATTTTAC 39986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127019695871696