Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_002371.2 Length=41724 Score E Sequences producing significant alignments: (Bits) Value seq493 138 3e-28 >seq493 Length=52014 Score = 138 bits (152), Expect = 3e-28 Identities = 97/111 (87%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 25278 TTTTGCTGCTTCCAGCTCAACTCGCAGCTTCCCAACCGTAAGCGCAATATCCTCGTCCTC 25337 |||||||| ||| |||||||| ||||| ||||| || || |||||||||||||||| ||| Sbjct 48134 TTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTC 48193 Query 25338 CTGGTCGCGGAGTTTGATGTATTGCTGTTTTTTATCCAGCTCATCCAGCAG 25388 |||||||||| |||||||||||||||| ||| | ||| | ||||||||||| Sbjct 48194 CTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAG 48244 Score = 138 bits (152), Expect = 3e-28 Identities = 97/111 (87%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 25278 TTTTGCTGCTTCCAGCTCAACTCGCAGCTTCCCAACCGTAAGCGCAATATCCTCGTCCTC 25337 |||||||| ||| |||||||| ||||| ||||| || || |||||||||||||||| ||| Sbjct 50914 TTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTC 50973 Query 25338 CTGGTCGCGGAGTTTGATGTATTGCTGTTTTTTATCCAGCTCATCCAGCAG 25388 |||||||||| |||||||||||||||| ||| | ||| | ||||||||||| Sbjct 50974 CTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAG 51024 Score = 111 bits (122), Expect = 4e-20 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 23392 CAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 23451 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47068 CAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 47127 Query 23452 TTAC 23455 |||| Sbjct 47128 TTAC 47131 Score = 111 bits (122), Expect = 4e-20 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 23392 CAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 23451 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49848 CAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 49907 Query 23452 TTAC 23455 |||| Sbjct 49908 TTAC 49911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133394040462224