Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq19 107 7e-19 seq642 80.6 1e-10 >seq19 Length=1029424 Score = 107 bits (118), Expect = 7e-19 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 48940 TGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGATGTGAGTCTCGCCCGGATAAGCGC 48999 ||||||||| | |||| | |||||||||||| | |||| || || | |||||| Sbjct 739405 TGCCCGGTGGTGGCGCTGTCCCAGCTCAACCGGAGTCTTGAGCAGCGGCCCAACAAGCGC 739346 Query 49000 CCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAGACGCGGACATCGTGATG 49059 ||||| | ||| ||||| || || |||||||||||||| ||||| ||| || | ||| Sbjct 739345 CCGGTTAACTCCGATCTACGGGAATCGGGCGCCATCGAGCAGGACGCCGACGTCATCATG 739286 Query 49060 TTCGTGTACCGCGATGAAGTCTAT 49083 || |||||||| ||||| |||||| Sbjct 739285 TTTGTGTACCGGGATGAGGTCTAT 739262 Score = 80.6 bits (88), Expect = 1e-10 Identities = 70/85 (82%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 53391 GTTTCGACGCAGGGTGGAGAAGT--GGTCATCTCGCCGGGCCCATAACCCGGAGATCGCT 53448 |||| || || |||||||| ||| ||| | |||| ||||| ||||||||| || ||| | Sbjct 190202 GTTTTGATGCGGGGTGGAGCAGTCTGGT-AGCTCGTCGGGCTCATAACCCGAAGGTCGTT 190144 Query 53449 GGTTCGAATCCAGCCCTTGCTACCA 53473 |||||||||||||||| ||||||| Sbjct 190143 GGTTCGAATCCAGCCCCCGCTACCA 190119 >seq642 Length=18206 Score = 80.6 bits (88), Expect = 1e-10 Identities = 90/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 41524 CCGATCTTGTCTGCCATTGCGAGCAGTTCCTCGGTCGTGTCCGCGAGCATGTGGCACATC 41583 ||||||| |||||||||||| |||||||| || | || || |||||||||||| Sbjct 11880 CCGATCTGGTCTGCCATTGCAAGCAGTTCTTCCAGGCTATCGGCCCACATGTGGCACATG 11821 Query 41584 TTCATGCGGCCAAACGTTGCGTTCATGTCGTCGACGTAAACGGCCATCA-CACCCCCTC 41641 |||| || || || | || | ||||| ||| |||||||| ||||| | || |||||| Sbjct 11820 ATCATTCGCCCGAAAGAGGCCTGCATGTTGTCAACGTAAACAGCCATGACCAGCCCCTC 11762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180440031511392