Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1 122 8e-23 >seq1 Length=7344524 Score = 122 bits (134), Expect = 8e-23 Identities = 297/448 (66%), Gaps = 8/448 (2%) Strand=Plus/Minus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||| ||||| ||||| |||| || || || | || || ||||| || || || | || Sbjct 2684066 ACAGGCAAAGTCACAGTGCATACCCTCATCACGGCTGATCAACTCATTAGAGAAGCTCAG 2684007 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 ||| ||||| | || || || || | ||| || || | || |||||||||||||| Sbjct 2684006 ACCCGGCATCAAACCACGCTTCTTCAACCAGAAGATCGAACAGAACGAACCAGAAAAGAA 2683947 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 ||||| || ||||| ||||| || | | |||||| || | | | || | || Sbjct 2683946 GATACCCTCCACTGCTGCAAAGGCGATGAGGCGCTCAGCGAAGGAACCAT------TCTC 2683893 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 ||||| ||||| | ||||||| || || |||| || | |||| || || || Sbjct 2683892 AATCCAACGCAAGGCCCACTCCGCTTTTTTCTTTACGCAGTCCAGGGTCTCGATGGCGTT 2683833 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 || | || | |||||| || | ||| |||||| || || || || | || | Sbjct 2683832 GAACAGGTAGTCTTTTTCCTTTGTGTCTTTAATATAGGTGTCGATGAGCAGGGAGTAAGT 2683773 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAG-CTTCGGATA 16592 || || || ||||||||||| |||||||| || || ||| || | | || || ||| Sbjct 2683772 CTCCGAGTGGATATTCTCCATCATGATCTGAAAGCCGTAGAAGAATTTGGCCTCCGTATA 2683713 Query 16593 TTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 ||||| || | ||| | || || | ||| ||||| || || || || || | Sbjct 2683712 -CTGTACCTCGGCTACAAAGTTCTCCGCCAGGTTCTCGTTTACGATCCCGTCAGAGGCCG 2683654 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAA 16680 ||||||| || |||| ||||| || || Sbjct 2683653 CAAAAAAGGCCAGTACATGTTTTATGAA 2683626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462507768015200