Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq53 138 9e-28 seq36 131 1e-25 seq63 122 7e-23 >seq53 Length=625924 Score = 138 bits (152), Expect = 9e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || ||| | || | ||| ||||| ||||||||| |||||||||||| | Sbjct 125396 GCCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 125455 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| |||| ||||| || || |||||||| |||| ||||| ||||| || || Sbjct 125456 GAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 125515 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCA 45287 | |||||||||||| || || ||||| | ||||| | | ||||| ||||| Sbjct 125516 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCCGTCGATCGTGTCCGAGGGCTCCA 125574 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | || | || || ||||||||||| || ||||| || |||||||||||| Sbjct 125575 CGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCATG 125624 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || ||| | || | ||| ||||| ||||||||| |||||||||||| | Sbjct 124940 GCCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 124999 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| |||| ||||| || || |||||||| |||| ||||| ||||| || || Sbjct 125000 GAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 125059 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCA 45287 | |||||||||||| || || ||||| | ||||| | | ||||| ||||| Sbjct 125060 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCCGTCGATCGTGTCCGAGGGCTCCA 125118 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | || | || || ||||||||||| || ||||| || ||||| |||||| Sbjct 125119 CGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 125168 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || ||| | || | ||| ||||| ||||||||| |||||||||||| | Sbjct 125168 GCCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 125227 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| |||| ||||| || || |||||||| |||| ||||| ||||| || || Sbjct 125228 GAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 125287 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCA 45287 | |||||||||||| || || ||||| | ||||| | | ||||| ||||| Sbjct 125288 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCCGTCGATCGTGTCCGAGGGCTCCA 125346 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | || | || || ||||||||||| || ||||| || ||||| |||||| Sbjct 125347 CGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 125396 Score = 125 bits (138), Expect = 6e-24 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| ||||||||| |||||||||||| | || ||| |||| ||||| || Sbjct 124736 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTG 124795 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| |||| ||||| ||||| || || | |||||||||||| || || Sbjct 124796 CTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 124855 Query 45253 TTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 ||||| | ||||| | | ||||| |||||| || | || || |||||||||| Sbjct 124856 CTGCTTCA-CGCCGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCG 124914 Query 45312 TCAGAGTCTTCACAAAGATTTGCATG 45337 | || ||||| || ||||| |||||| Sbjct 124915 TGAGGGTCTTGACGAAGATCTGCATG 124940 Score = 113 bits (124), Expect = 4e-20 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| |||||||||||| | || ||| |||| ||||| || || |||||||| | Sbjct 126093 CCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 126152 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| || || | |||||||||||| || || ||||| | ||||| Sbjct 126153 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCCG 126211 Query 45267 -CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| |||||| || | || || ||||||||||| || |||||||| Sbjct 126212 TCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTCACG 126271 Query 45326 AAGATTTGC 45334 || || ||| Sbjct 126272 AAAATCTGC 126280 >seq36 Length=729648 Score = 131 bits (144), Expect = 1e-25 Identities = 147/194 (76%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||| ||||| |||||||||||| |||| ||| |||| ||||| || || |||||||| Sbjct 222014 CTCTTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 221955 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||| || || || || | ||||||||||||| || || ||||| | ||| Sbjct 221954 GATCAGACGCTGCTGATCAGGCGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGC 221896 Query 45265 CG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 || | | ||||| |||||| |||| ||| || ||||||||||| || ||||| | Sbjct 221895 CGTCGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGA 221836 Query 45324 CAAAGATTTGCATG 45337 | ||||| |||||| Sbjct 221835 CGAAGATCTGCATG 221822 Score = 127 bits (140), Expect = 2e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| |||||||||||| |||| ||| |||| ||||| || || |||||||| | Sbjct 220539 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 220480 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| || || || || | |||||||||||| || || ||||| | ||||| Sbjct 220479 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCCG 220421 Query 45267 -CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| |||||| |||| ||| || ||||||||||| || ||||| || Sbjct 220420 TCGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 220361 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 220360 AAGATCTGCATG 220349 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| |||||||||||| |||| ||| |||| ||||| || || ||||| || | Sbjct 221028 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 220969 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| || || || || | |||||||||||| || || ||||| | ||||| Sbjct 220968 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCCG 220910 Query 45267 -CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| |||||| |||| ||| || ||||||||||| || ||||| || Sbjct 220909 TCGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 220850 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 220849 AAGATCTGCATG 220838 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| |||||||||||| |||| ||| |||| ||||| || || ||||| || | Sbjct 221520 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 221461 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| || || || || | |||||||||||| || || ||||| | ||||| Sbjct 221460 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCCG 221402 Query 45267 -CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| |||||| |||| ||| || ||||||||||| || ||||| || Sbjct 221401 TCGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 221342 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 221341 AAGATCTGCATG 221330 Score = 120 bits (132), Expect = 2e-22 Identities = 141/188 (75%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| |||||||||||| |||| ||| |||| ||||| || || ||||| || | Sbjct 220066 CCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 220007 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| || || | |||||||||||| ||||||||||| | ||||| Sbjct 220006 TCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATTTTTTGCTTCA-CGCCG 219948 Query 45267 -CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| ||| || || | ||| || ||||||||||| |||||||| || Sbjct 219947 TCGATCGTGTCCGAGGGCTCGACATCTAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACG 219888 Query 45326 AAGATTTG 45333 || || || Sbjct 219887 AAAATCTG 219880 >seq63 Length=566113 Score = 122 bits (134), Expect = 7e-23 Identities = 142/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 |||| || || ||||||||| |||| ||| |||| ||||| || ||||||||||| | Sbjct 329441 CCTTTTGGATATTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGA 329500 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| ||||| || || | |||||||||||| || || ||||| | ||||| Sbjct 329501 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTATGCTTCA-CGCCG 329559 Query 45267 -CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| |||||| || | ||| | ||||||||||| |||||||| ||| Sbjct 329560 TCGATCGTGTCCGAGGGCTCCACGTCAAGGGTGACGGTCTTGCCCGTGAGAGTCTTGACA 329619 Query 45326 AAGATTTGC 45334 ||||| ||| Sbjct 329620 AAGATCTGC 329628 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || || | || | ||| || || ||||||||| |||||||||||| | Sbjct 328820 GCCACCACGCAGCCTCAGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCT 328879 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| |||| ||||| || ||||| ||||| |||| ||||| ||||| || || Sbjct 328880 CAGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGG 328939 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCA 45287 | |||||||||||| || || |||| | ||||| | | |||| || | Sbjct 328940 GATGCCCTCCTTGTCCTGGATCTTCGGCTTCA-CGCCGTCGATCGTGTCGGAGGGTTCTA 328998 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | || | || || ||||| ||||| || ||||| || ||||| |||||| Sbjct 328999 CGTCAAGCGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCATG 329048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395071675435372