Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq2 176 2e-39 seq3 80.6 9e-11 >seq2 Length=6328565 Score = 176 bits (194), Expect = 2e-39 Identities = 407/607 (67%), Gaps = 16/607 (3%) Strand=Plus/Plus Query 33314 ACTGAACCGCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAATGCGGACACGTCAGC 33373 ||||||||| |||||| | |||||| ||||||||||||| ||| | |||| | | Sbjct 3902730 ACTGAACCGTACCGGGTTTTCCGGAGGCCATTTGGTTTAAGTTA-TGCAGCCACGGC--C 3902786 Query 33374 GGCATTTCTGAGTTGTCTGTAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGCCGAG 33433 || || || | ||| || | | |||| |||||| | | || | |||| Sbjct 3902787 GGTTGATCCAGCATGGC-GTAATACTGTTCCTCCACTTCAGAGCG----ATGTTTCCGAT 3902841 Query 33434 CGGTTCCATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCGAC 33493 || |||| || || | || ||| ||||| ||||||||||||| || || | || || Sbjct 3902842 GGGCTCCAGCAAACGCCGGTGATTGAACCAGTCGACCCATTCCAGGGTGGCAAACTCAAC 3902901 Query 33494 GGATTCC---CT-CGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGC 33549 | ||| || ||| || || | ||||||||||| | || | |||||||| | Sbjct 3902902 AGCTTCGAAGCTGCGT----CACGGCCCACGCCGATGAATGACCTCGGCTTTGTACAGCC 3902957 Query 33550 CGTTGATCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCT 33609 | |||||||||||||| || || |||||||| ||||| || || ||||| ||||||| Sbjct 3902958 CATTGATCGTTTCGGCGAGAGCGTTGTCGTAACTGTCACCGAAACTCCCGACCGAGGGCT 3903017 Query 33610 CGATGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTGT 33669 |||| || ||||| |||| || | ||| || |||||||| ||||||| Sbjct 3903018 CGATACCCGCCTCGGCCAATCGCTACGAGTACTTGATCGATACGTATTGGCCTCCCCTGT 3903077 Query 33670 CGGAATGATGAATCAAAGTCCCGTCCTCGCCCGGTTGGCGGGCGTACAGCGCTTGTTCAA 33729 | || || || | | | ||| | | || |||| | | ||||||| || | Sbjct 3903078 CCGAGTGGTGCACGAGGCTGCCGCCAAGAACGGGACGGCGATCATGGAGCGCTTACTCCA 3903137 Query 33730 GTGCATCCAGAACAAAGTCCGTGGTCATCGACGAGCTGACCCGCCAGCCAACAATACGGC 33789 | |||| || | ||| | | || | |||||| |||||||| || ||| | | Sbjct 3903138 GGACATCGAGGAGGAAGGCTACAAGCGCCGTCTGGCTGACGCGCCAGCCGACGATAGGCC 3903197 Query 33790 GGGCGAACACGTCGATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGACATACG 33849 |||| ||| |||| | |||||| | || || | ||| |||| || | |||||| | Sbjct 3903198 GGGCAAACGCGTCAACAACGAATTCGACATAGACGAAGCACCGCCAAGTGGCGACATAGG 3903257 Query 33850 TAAAATCCGACACCCAGAGCTGATTCGGTCGGTCAGCCTTGAACTGCCGGTTGACTCGGT 33909 | |||||||| ||||||||| |||||| |||||||||||| ||||| | |||| Sbjct 3903258 TGAAATCCGAAACCCAGAGCCTGTTCGGTGCAGGAGCCTTGAACTGACGGTTTATGCGGT 3903317 Query 33910 CCAGCGG 33916 | | ||| Sbjct 3903318 CGAACGG 3903324 >seq3 Length=4400433 Score = 80.6 bits (88), Expect = 9e-11 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 29011 AAGTGGTCGGAGCGATAGGATTCGAACCTACGACCCTCTGATCCCAAATCAG 29062 || ||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 3749077 AACTGGTCGGAGCGATAGGATTCGAACCTACGACCCTCTGGTCCCAAACCAG 3749128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170670516433640