Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 215 6e-51 >seq1 Length=7344524 Score = 215 bits (238), Expect = 6e-51 Identities = 494/734 (67%), Gaps = 25/734 (3%) Strand=Plus/Minus Query 33455 ATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATAC 33514 |||||| || || ||| || || || || | || | |||||| | |||||| ||| Sbjct 2684195 ATTCATACCAATCAGTCCTACGGGGAGGGCATCCGTTACAAATTCCTTTTCAATTTCTAC 2684136 Query 33515 CGCATTTGTTATAATAAATCTAACGGTTTCTTCAC-TCG---GTGGATG---TAATAAAT 33567 ||||| | |||||| ||| || || |||| | | ||||||| | || | | Sbjct 2684135 GGCATTGGCAATAATACCTCTCACCGTATCTTTTGGTAGCTTGTGGATGATGTGATCATT 2684076 Query 33568 GTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGT 33627 || ||| |||||| || || || ||||||| |||||| || | || || || || | Sbjct 2684075 GT----ACAGCAAACAGGCAAAGTCACAGTGCATACCCTCATCACGGCTGATCAACTCAT 2684020 Query 33628 TAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATG 33687 |||| || | || || ||||| | |||||||| || | ||| || || ||| ||| | Sbjct 2684019 TAGAGAAGCTCAGACCCGGCATCAAACCACGCTTCTTCAACCAGAAGATCGAACAGAACG 2683960 Query 33688 ATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG 33747 | || ||||||||||| || || ||||| |||||||| || || | ||| | | Sbjct 2683959 AACCAGAAAAGAAGATACCCTCCACTGCTGCAAAGGCGATGAGGCGCTCAGCGAAGGAAC 2683900 Query 33748 CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33807 | | ||| ||||| ||||| || || || || ||||| || || || | Sbjct 2683899 CATTCTCA---ATCCAACGCAAGGCCCACTCCGCTTTTTTCTTTACGCAGTCCAGGGTCT 2683843 Query 33808 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33867 | ||||| || || || |||| |||||| || | ||||||| ||| || ||||| | | Sbjct 2683842 CGATGGCGTTGAACAGGTAGTCTTTTTCCTTTGTGTCTTTAATATAGGTGTCGATGAGCA 2683783 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 | || | ||||| || || || || || |||||||| |||||||| || | | Sbjct 2683782 GGGAGTAAGTCTCCGAGTGGATATTCTCCATCATGATCTGAAAGCCGTAGAAGAATTTGG 2683723 Query 33928 CCTCGGTAATCTGCACTTCTG-TACAAAATCGTTCT--GCTAAATTTTCATTCACTATTC 33984 |||| ||| ||| || || | |||||| ||||| || | || || || || || | Sbjct 2683722 CCTCCGTATACTGTACCTCGGCTACAAA---GTTCTCCGCCAGGTTCTCGTTTACGATCC 2683666 Query 33985 CATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTT 34043 | ||| ||| |||||||| |||| |||||||||||| || | || || | || || Sbjct 2683665 CGTCAGAGGCCGCAAAAAAGGCCAGTACATGTTTTATGAAGTGACGCTCATCGTCGT-TT 2683607 Query 34044 AGTT---TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 34100 |||| |||||||||| | | |||| | || | || ||| | ||||| || Sbjct 2683606 AGTTTGCTATTCCAATCGGTCAGGTCTTGGCTCAGGTCAATCTCCTCCGCAGTCCAGAAA 2683547 Query 34101 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACA 34160 | || || | ||| ||||| ||||||||||| || ||||| ||||| | |||| Sbjct 2683546 CAGGCTTCCGACTTCTTATATTCGGCCCAGATGTCATCATGCTGGATGGGGAAGAGAACA 2683487 Query 34161 AATCTATTTGGATT 34174 |||| ||| || || Sbjct 2683486 AATCGATTCGGGTT 2683473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629811837168960