Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq2 131 6e-26 seq556 107 7e-19 >seq2 Length=6328565 Score = 131 bits (144), Expect = 6e-26 Identities = 130/166 (78%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 48648 CCGAACCCAATCGACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACATCATCGGC 48707 ||||| ||||| |||| || |||||| |||| | ||||| | || | || | ||| Sbjct 340818 CCGAATCCAATTGACATTCACGTCGGCAGCCGCGTTCGGCTGAGACGTATGATGCTAGGC 340877 Query 48708 ATGAGCCAGGAGACGCT-GGCTGCGCATCTCGGCATCACCTTCCAGCAGGTCCAGAAATA 48766 ||||| ||||| | ||| ||| || || |||||||||||||||||| |||||||||| Sbjct 340878 ATGAGTCAGGAAAAGCTCGGCGAAGCC-CTGGGCATCACCTTCCAGCAGATCCAGAAATA 340936 Query 48767 CGAAAAGGGCGCCAACCGCGTCGGCGCCAGCAGGCTGCAGGCCATC 48812 |||||| ||| |||||||| ||||||||||| | |||||| |||| Sbjct 340937 CGAAAAAGGCACCAACCGCATCGGCGCCAGCCGTCTGCAGCACATC 340982 Score = 100 bits (110), Expect = 1e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 44069 CATGCCGAGCGCTGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGGT 44128 |||||||||||| || ||| || || | || |||| ||| ||||| | | Sbjct 5455890 CATGCCGAGCGCGTGAAGATAGAGATCCAGAACAGCTTCTTCCTCTTCGCGCTCATGCGG 5455949 Query 44129 GTCCTGCTTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCCTT 44188 | || ||||||||| || ||||| |||| || || | || |||| | || || Sbjct 5455950 CTGCTTCTTGCGCAGGCTGACGACCTTGCGCAAAATTTTCACGTCATAGCCATTTCCTTT 5456009 Query 44189 TGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAGCG 44248 || || | || |||||||||||||||||||| ||| ||| |||||||| |||| ||| Sbjct 5456010 GGCTTCCGCATAGACATCCTTGATGTCGTCGGCAATGACCTTTTTTTCTTCTTCCAGGCG 5456069 Query 44249 TTCGATGCGGTGGATGAAGGCCTTGAGCTGATC 44281 || ||||| | |||||| ||| |||||||| Sbjct 5456070 CTCAATGCGCTCGATGAATGCCCGCAGCTGATC 5456102 Score = 84.2 bits (92), Expect = 8e-12 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 44069 CATGCCGAGCGC-TGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGT-CG 44126 ||| |||||||| ||| | ||| ||| || | ||| |||| ||| ||||| | || Sbjct 3162592 CATTCCGAGCGCGTGC-ATATAGAGGTCAAGAACGGCATCTTCCTCTTCGCGCTCATGCG 3162534 Query 44127 G-TGTCCTGCTTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCC 44185 | ||| | |||||||| | |||||| |||| || | | || |||| | || Sbjct 3162533 GCTGTTTT--TTGCGCAGGCTCACCACCTTGCGCAAAATGGCGACGTCATAGCCATTGCC 3162476 Query 44186 CTTTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAA 44245 || |||||| | || |||||||||||||| ||||||||| ||||||||| || || | Sbjct 3162475 TTTGGCCTCGGCATAGACATCCTTGATGTCATCGGCGATGACCTTCTTTTCCTCTTCAAG 3162416 Query 44246 GCGTTCGATGCGGTGGATGAAGG 44268 ||| || ||||| | || |||| Sbjct 3162415 GCGCTCAATGCGCTCGACAAAGG 3162393 >seq556 Length=36347 Score = 107 bits (118), Expect = 7e-19 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 44079 GCTGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGGTGTCCTGCTTG 44138 ||||| || || || || || | ||| ||||||||||| ||||||| ||| || Sbjct 10117 GCTGCAAGATAAGTATCAAGCACGGCTTCTTGCTCCATACGCTCGTTTTGATCCAATTTA 10058 Query 44139 CGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCCTTTGCCTCGCCG 44198 || | || | || || |||| | ||||| |||| | || | | ||||| ||||| Sbjct 10057 CGAATAGAAACAACTTTGCGCAAAACCTTGGTATCGTAACCCATAGCTTTTGCTTCGCCA 9998 Query 44199 TACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAGCGTTCGATGCGG 44258 || ||||| ||||||||||| ||||| || || || ||||| || | ||| || ||||| Sbjct 9997 TATACATCTTTGATGTCGTCTGCGATTGTTTTTTTCTCTTCTTCAAGGCGCTCAATGCGC 9938 Query 44259 TGGATGAAGGCCTTGAGCTGATCGCGCGCAACGC 44292 | |||||| || | || |||| || || |||| Sbjct 9937 TCGATGAATGCTCTTAGTTGATTGCTGGCTACGC 9904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183608003973552