Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 >seq1 Length=7344524 Score = 120 bits (132), Expect = 3e-22 Identities = 380/583 (65%), Gaps = 22/583 (4%) Strand=Plus/Minus Query 11503 ATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAAC 11562 ||||||||| || || | || || | ||| | || | ||| |||||||| || | || Sbjct 2684195 ATTCATACCAATCAGTCCTACGGGGAGGGCATCCGTTACAAATTCCTTTTCAATTTCTAC 2684136 Query 11563 CGCAT---CAATGAT---TATCGACGTTATAACTTCCTTAGATGGTGGATG---TAATAA 11613 |||| |||| || | || ||| || || | || | ||||||| | || | Sbjct 2684135 GGCATTGGCAATAATACCTCTCACCGT-ATCTTTTGGT-AGCTTGTGGATGATGTGATCA 2684078 Query 11614 ATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTC 11673 ||| ||| ||||| ||||| ||||| || | ||| || || | || || | || Sbjct 2684077 TTGT----ACAGCAAACAGGCAAAGTCACAGTGCATACCCTCATCACGGCTGATCAACTC 2684022 Query 11674 ATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAA 11733 |||||| || | | || |||||||| || || || || | ||| || || | | || Sbjct 2684021 ATTAGAGAAGCTCAGACCCGGCATCAAACCACGCTTCTTCAACCAGAAGATCGAACAGAA 2683962 Query 11734 TGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCC--ATAT 11791 |||||||||||||| || |||||||| |||||||| || | | | || | | Sbjct 2683961 CGAACCAGAAAAGAAGATACCCTCCACTGCTGCAAAGGCGATGAGGCGCTCAGCGAAGGA 2683902 Query 11792 ACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATT 11851 ||| | | ||||| |||||| || ||||| || |||||||| |||| Sbjct 2683901 ACCAT-----TCTCAATCCAACGCAAGGCCCACTCCGCTTTTTTCTTTACGCAGTCCAGG 2683847 Query 11852 GTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATT 11911 || || || ||||| || | | |||||| | | ||| | | ||| || || || Sbjct 2683846 GTCTCGATGGCGTTGAACAGGTAGTCTTTTTCCTTTGTGTCTTTAATATAGGTGTCGATG 2683787 Query 11912 AATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACAT 11971 | | || | || || || ||||| ||||| || ||||| || ||||| || Sbjct 2683786 AGCAGGGAGTAAGTCTCCGAGTGGATATTCTCCATCATGATCTGAAAGCCGTAGAAGAAT 2683727 Query 11972 CGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATA 12031 ||||| | | ||||||| || | ||| | ||||| | ||||| ||||| || Sbjct 2683726 TTGGCCTCCGTATACTGTACCTCGGCTACAAAGTTCTCCGCCAGGTTCTCGTTTACGATC 2683667 Query 12032 CCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGT 12074 || ||| | |||||||| || |||| ||||||||| |||| Sbjct 2683666 CCGTCAGAGGCCGCAAAAAAGGCCAGTACATGTTTTATGAAGT 2683624 Score = 116 bits (128), Expect = 3e-21 Identities = 258/386 (67%), Gaps = 6/386 (2%) Strand=Plus/Minus Query 37171 TATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGAT 37230 || |||||||| || ||||| || | | || || || | | || ||||| ||||| Sbjct 2686362 TAGATATTGCTGGTGTATGGCTCGAAACATTCGTTGTTGCCCAGGATCTGAGAGGTAGAA 2686303 Query 37231 GCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTT 37290 ||||| |||||||| |||| || | ||| || | || |||| | ||||| ||| Sbjct 2686302 GCAGTTGGCATTGGCGCTACCAGCAAGCTGTTGCGCAGGCCATTCTTCTTAATGTCCTTC 2686243 Query 37291 TTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGA 37350 || || || ||||||||| || |||| || |||||||||||| || || Sbjct 2686242 TTCAGCTCGGCCCAATCCCAACGTTCGCTTGGCGTCACACCCCACATATCATACTGCAGT 2686183 Query 37351 ATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGT 37410 | ||| | || ||||| || | ||||| |||| |||| || | ||| || || Sbjct 2686182 ACACCCTCGCTGGCTGGTGAGCCCTTATAACTCTCGTAAGTACCTTGCTCTTTGGCCAGG 2686123 Query 37411 TCGCAACTAGATTCT---AGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAAT 37467 | || || ||| || || ||||| || || || || ||||| | | | || ||| Sbjct 2686122 GCACAGCT---TTCCGTCAGGGCCGCATAGTAGATGGTCTCAAAAATGTCTTTGTTCAAT 2686066 Query 37468 ATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCC 37527 ||| || |||||||| |||| |||| || || || || |||| ||||||||| Sbjct 2686065 TGGCGTGCCTCCTCGCTATCAAATGGGTAGCGCATCAAAATGAAGGCATCCGCCAAACCC 2686006 Query 37528 TGAACACCGATACCTATGGGTCTATG 37553 || ||||| | ||| || || | ||| Sbjct 2686005 TGTACACCCAAACCGATTGGGCGATG 2685980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468520512998080